Gene Pmob_1070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmob_1070 
Symbol 
ID5758115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePetrotoga mobilis SJ95 
KingdomBacteria 
Replicon accessionNC_010003 
Strand
Start bp1139276 
End bp1142479 
Gene Length3204 bp 
Protein Length1067 aa 
Translation table11 
GC content37% 
IMG OID641302276 
ProductHsdR family type I site-specific deoxyribonuclease 
Protein accessionYP_001568112 
Protein GI160902531 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.558069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCGCA GACTTGATGA AGAACATTAT GTAGAAAATC CTTTCCTCGC TCAGCTTCTG 
AGGTTGGGCT GGAAAGTTTA TAGACAGAAT AAGGATAACC CTGAAGATGT AAAAGAAATC
AAATCTTTTA ACTCATCCTC TGAACCTGAC TATAGTGAAA GCATAAAATT CAGGGAAACA
TTTGGAGAGG TAATTCTCGA AGAGGAACTC ATAAGTTCAA TCAAAAGAAT AAATCCATGG
ATGGAAGAAG ACCAGATAAA TGAAGTTGTA AGAAGGATAA AAACGCCTTC AGCAAACTTT
CTTCTGGAGG CGAACAAGGA AATTCACGAT TTGTTACTTG AAAATACTTC TGTATCAGAG
AACAGGAAAA CAGGAGAAAA AAGTCCAACT GTCAGATTTA TAGATTTTAG AAACCCAGAA
AATAACTCAT TTATTGCAAT TTCCCAGTTT AAGGTAAATA TACCAGGGAC TGAGAAGCAT
ATAATACCCG ATATTGTTCT TTTTGTAAAT GGTTTGCCTT TGGTGGTCGT GGAATGTAAA
TCTCCAGCCA TTGCAGACCC AATTACAGAG GCGATAACCC AGCTTAGGAG ATACTCCAAC
AGAAGGGGAG AAAAAGAGGG GAATGAAAAA CTCTTCTGGT ATAATCTCTT TACGATTGCT
ACATCTAATC AAACTGCAAA GTATGGTACT ATAACTGCAG AATATGAACA TTTTGTCGAA
TGGAAAGATC CGTACCCTTA CACTCTATCA GACATAAATC CTGAGAGAAG TGTAACTAGT
CAACAGGTTT TAGTTCAGGG AATGCTAGCA AAGGGCAACA TCTTAGATCT TCTCCATACG
TTTACCATTT TCAAAGAGGA TTCTAAGGGC GGTGTTATAA AGGTTGTGGC AAGATACCAG
CAGTTCAGAG CAGTTAAGAA GATCGTAAAA AAGATAAAAG AAGGGAAAAC CCCTGAAGAA
AGAGGGGGAA TTATCTGGCA TACCCAGGGC TCTGGAAAAT CATTAACCAT GATGTTTACT
GTTAGAGAAA TGTATCATAA CCCTGAATTT GGCAACTTCA AGGTTATTTT TATAACAGAC
AGAAAAGATC TAGAAAGACA ATTAAAAGAA ACATCAAAAA GTGTTGGCTT TACGGTCCAT
CCTGCTGGGA GTATAAAAGA GTTACAGAAC CTTTTAAAGA CTGACACTCC AGACCTTGTT
ATGGGCATGA TTCACAAATT TCAAGAAAGA GAACTTAAAA TAGAATTTCC TCTGTTAAAT
ACATCCCCGA ACATTCTTAT CATGATAGAC GAAGCACACA GAACACAATA CAAATTCCTG
GGGGCCAATC TGAGAAAAGC CCTCCCAAAT GCTCTAAAAA TAGCCTTCAC AGGCACACCA
ATTGAAAAAA CTGAAAAAAC TTTTGGTGAG TACATAGATA AATACAGTAT AAGACAAGCG
GTTGATGATG GTGTAACCGT GGAAATCGTT TATGAAGGTA GATCACACAC CGCAGAACTT
TCTGATGAAG AAGCTGCAAA TGCAAAGTTT GAGGATGTTT TCTCCATGAT TGATGCAGAT
CAGAAAGCCA AGATTATGGG GAGATACACA TGGCAGGCTT ATCTTGAAGA TGAGAATGTG
ATAATGGACA AGGCGAAGGA TATGATAAAT CACTACGTTG CCCATGTCTT TCCAAATGGA
TTTAAGGCTC AGGTTGTAAC TGTTTCAAGG CTTGCTGCAA TAAGATATAA AAAAGCCCTT
GAGAATGCAT TGAAGGAAAA AATAGAGGAA TTAAAAAAGA ATACTCTGAG TAAAATAGAT
ATAAATCAGC TTGAGAAATT AAAAGTTGGC GTGGTTATTT CTGGATTGGC TAATGATCCT
CCAGAGTACC AGCCTTACAC CGACACAAAC GAGCATGAAA AGATAATAAA GAGCTTCAAG
TTTCCCTTTG ATAAAACTGA TGATGGAGGC ATTTCTGGTG ATGTTGGTAT TTTAGTTGTT
CAGAGTATGC TTATTACTGG ATTTGATGCC CCTATTGAAC AGGTTATGTA TTTAGATAAT
GTAATTAAAG AACACAACTT ATTACAAGCA ATTGCCAGAG TGAACAGAGT TTACAAAAAC
AAGAGTTGTG GTTTTATTGT GGATTATGTT GGAGTTTTAA AGCATTTAAG AGAATCTCTT
GCCATTTATG CCGATGAAGA TATTGAAGAG ATCACGCAAG TTGTTAAGGA TAAAGCCAAA
AGCATTGATG ATTTAAAATT TATCCATAGC CTTATCGAAG ATTTTTTTAA AAAGTATGAG
ATTGAAAACT GGAGAGATAA CATAGATGAA TGCATAGATC TTCTTGTTGA TGAAGAGGTG
AGAAATGAAT TTATAATGCT TATAAGAAGC TTTAATAGCG CAATGGATGC TGTGCTTCCT
GACCCAGATG CTCTAAAATA CGTCACGGAT CTAAAGATTC TCAATTTCAT AAAAGAGTCC
GCAAGGAACA GGTATAGGGA CGACAAGTTA AGCATCAAGG ATGCAAGTAG AAAGATAAGG
GAGATTGTTG AAGAGTATCT AATATCAAAA GGTGTTGATC CAAAAATACC ACCAACTCCT
CTTCTTGAAG ATAAATTCAT CAATAAATTA GAAAAGAAAA AATCGAGCAA AGCGAGAGCT
GAAGAACTTA GGTATGCCAT TGTAGAACAC ATTGAAAAGC ACTATGAAGA AGACCCTGAG
TTTTACGAGA GGTTTTCTGA TAGGTTAAGG AGAATCCTTG AAGAATACAA AGATAACTGG
GACAATCTTG CCATCGAGCT TAAAAAGTTT AGAGAAGCTA TAAAAAAAGG AAGAGAAGCA
GAAGAGACCT TTGGTTTTGA ACCAAAAAAA GAGATGCCAT TTTTCGGACT GATAAAACAA
GAAATATACG GTGTAAAACC TATCGAAACA CTGAGCGATA AAGATATTGA CTTTTTAGTT
AGTTTAACCA AGGATGTGAT TGAAATCGTA AGAAGAGAGA GTCAAGTGGT TGACTTCTGG
GAGAACTACA CCAGGCAAAA GATATTAAAA TCTTTTTTGA TATCCAGGTT ACTCTCTTCT
TATTCCCAAT CCCGAAACGA AGAGTATGTG TTAAGGGAAA ATCCTGCTCC GTATTTAGCA
GAGGAGAACA AAGTGATATT TGGAAAAAGA AATGAAATAG CCCAGAAGTT GATGGAACTT
GCTTATCACA TTTATGGGAA GTGA
 
Protein sequence
MYRRLDEEHY VENPFLAQLL RLGWKVYRQN KDNPEDVKEI KSFNSSSEPD YSESIKFRET 
FGEVILEEEL ISSIKRINPW MEEDQINEVV RRIKTPSANF LLEANKEIHD LLLENTSVSE
NRKTGEKSPT VRFIDFRNPE NNSFIAISQF KVNIPGTEKH IIPDIVLFVN GLPLVVVECK
SPAIADPITE AITQLRRYSN RRGEKEGNEK LFWYNLFTIA TSNQTAKYGT ITAEYEHFVE
WKDPYPYTLS DINPERSVTS QQVLVQGMLA KGNILDLLHT FTIFKEDSKG GVIKVVARYQ
QFRAVKKIVK KIKEGKTPEE RGGIIWHTQG SGKSLTMMFT VREMYHNPEF GNFKVIFITD
RKDLERQLKE TSKSVGFTVH PAGSIKELQN LLKTDTPDLV MGMIHKFQER ELKIEFPLLN
TSPNILIMID EAHRTQYKFL GANLRKALPN ALKIAFTGTP IEKTEKTFGE YIDKYSIRQA
VDDGVTVEIV YEGRSHTAEL SDEEAANAKF EDVFSMIDAD QKAKIMGRYT WQAYLEDENV
IMDKAKDMIN HYVAHVFPNG FKAQVVTVSR LAAIRYKKAL ENALKEKIEE LKKNTLSKID
INQLEKLKVG VVISGLANDP PEYQPYTDTN EHEKIIKSFK FPFDKTDDGG ISGDVGILVV
QSMLITGFDA PIEQVMYLDN VIKEHNLLQA IARVNRVYKN KSCGFIVDYV GVLKHLRESL
AIYADEDIEE ITQVVKDKAK SIDDLKFIHS LIEDFFKKYE IENWRDNIDE CIDLLVDEEV
RNEFIMLIRS FNSAMDAVLP DPDALKYVTD LKILNFIKES ARNRYRDDKL SIKDASRKIR
EIVEEYLISK GVDPKIPPTP LLEDKFINKL EKKKSSKARA EELRYAIVEH IEKHYEEDPE
FYERFSDRLR RILEEYKDNW DNLAIELKKF REAIKKGREA EETFGFEPKK EMPFFGLIKQ
EIYGVKPIET LSDKDIDFLV SLTKDVIEIV RRESQVVDFW ENYTRQKILK SFLISRLLSS
YSQSRNEEYV LRENPAPYLA EENKVIFGKR NEIAQKLMEL AYHIYGK