| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmob_0355 |
|---|
| Symbol | |
|---|
| ID | 5758522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Petrotoga mobilis SJ95 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010003 |
|---|
| Strand | - |
|---|
| Start bp | 381074 |
|---|
| End bp | 384637 |
|---|
| Gene Length | 3564 bp |
|---|
| Protein Length | 1187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 641301558 |
|---|
| Product | DNA-directed RNA polymerase, beta subunit |
|---|
| Protein accession | YP_001567420 |
|---|
| Protein GI | 160901839 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATACGG TCGTAAGAGA AGTAGGTAGG AGAGAAAGAA AGTTTTTTGG GAAAGTTCCA
GAGAAAACTG AAATATACGA GGATTTAGTG AAAATTCAAA AAGATTCTTT TAGGGATTTT
TTAGATAAAA AGATTATGGA AAGCATTAAA AGATATATGC CAATAAAGAT ACCCGTTAAA
GCGAGTGGGA AGAAAAACAA AGAATTTTTG ATTGATTTTG TGGATGTAAA GTTTGAAGAC
TCGTCTTTTA GTGAGAATGA ATGTAGGGAC AAGGGATTAA CTTATGCTGG TAAAGCTTAT
TTAAAAGTTA GGATAACTGA TTCAGCAACA GGTGAAATGA TAGAAAAAGA CGATATATTC
TTGTGTAACA TCCCTTATAT GACTGAAAGA GGTATATTTA TTGTCAATGG AGCAGAAAGG
GTAATAGTTA ACCAACTCGT CAGATCCCCT GGGGTGTATT TTATAAAAGA AGAAGAGACA
GATACTTCTA AAGAAATGTT TATAGCTCAC TTTTTACCCA TTAAAGGGGC TTGGTTGGAG
ATACTTTACA ACCCTAATCC AGGTAAAGAG GTTCTTCAGG TCAGAATAGA CAGAAAAAGA
AAATTCAATT TTTTCCTTTT TTTAAGGGCA TTGGGATACG AGAATGATTT GGATATATTA
CGATTATTCC CCAAGGAAAT TGATTTAGAT GATGAAGTCG AACTGTCAAA TTATAACAAT
TGTACTGTGT TGTCGGACTT ATCGTTCCAG GAATTAGATG ATATGGATCC CCCAAGAAAA
TCAACTTACG GTATGAAATT ATACGAAGTC TTGGAACTGC TGAAAAAATA TGAAATTAAG
AGTGTAACAG TAGCTCATCT GGTCGCAGAA ATAACGTTAG AAAAGATGAA AAAAAGATAT
GAAAAAGAAG AAAGATTGAC TTCTCTAGAA GCTTACAAAG AAATTTTTTC GAAATTAAAA
CCTACTGAAA TTCCAAGGGC GCAGAAGGCC AAAGAAGAAA TAGAAGATAT GTACTTCAAT
CCTGAAAAAT TCGATTTTTC GCAGATTGGA AGACAGAAAA TTCAGGTAAA ATTGAGAAAA
GCTTATATTG ATTATTTACG AGAGGTTGAA AAAAAGGATA TTTCTGAAGA TATGGAAGAC
AAAATAAAAT ATCCTATTAA AACTTTTGCT GTTGACAAGT TAGACATCAT CTTGTCCGCC
AGATACTTGC TGCATGTTAA GGAAAATATT GAAGGACTTG ACACAAGAGA TCATTTGGGT
AATAAAAGAG TGAGATCGGT TGGAGAACTC ATGCAAATCG AATTTGAACG AGCTTTTTCT
AAAATGATTC AGCATGCTCC TGAAAAACTT GCAGGTGTTC AATCAATTAA TAAAATAAGT
CCTCAATCCC TTATAAATTC CAGATCAATA ATGACTGCCT TTCACCAATT CTTTGCATCT
AGTCAATTAT CGCAATTCTT AGATCAGGTG AATCCTTTAG CTGAGCTAAC TCATAAGAGA
AGGCTATCAG CAATAGGTCC TGGAGGTTTG AAAAGAGAAC ATGCTAAATT TGAAGTAAGG
GATGTCCACC ATTCTCATTA TGGAAGGATG TGTCCTATCG AGACCCCTGA AGGTGCGAAT
ATTGGATTAA TCACTTCTAT GGCAATTTTA GCTAAAGTCG ATGAATATGG ATTTTTGAAA
ACTCCTTATT ACAGGGTAAA GCATGCAAAA GTTGATTTAA ACAATATAGT ATATTTGAGT
GCTGACGAGG AAGAACTTTA TAGAATTGCC CCTGCTTCCG CCGAAATTGG GGAAGATGGT
TCTTTAGTAG AAGAGTACAT CGAAGCTAGA TATTTAGGAA AAGTCAGTTT ATTCCACAAA
GATGAGATTG AATATATATC AGTCACCCCA AAACAGATTG CCTCTGTATC AGCTGCTCTT
ATTCCATTTT TAGAGCACGA TGACGCAAAC AGAGCTTTAA TGGGGTCAAA CATGCAAAGG
CAGGCCGTTC CTCTTCTTAG ACCTCAAGCT CCTTTTGTTG GTACAGGAGT AGAATGGTTA
GCAGCGAGAG ACTCAGGCTA TTTGATAATG GCAAAACATA AAGGTATTGT TGATTATGTG
GATGGAAGAA AAATTGTAAT CACTAGATTG GACGAAGAGA ATAACGTTCT AAAAGATTCC
AATGACGAAC CCTTAAAAGA TGAATACACT TTATTAAAAT ATGTTAGATC GAACCAAGAC
ATGTGTATAA ACCAAGTTCC TATTGTTAAC GTTGGAGATG TAGTGACAAA AGGGCAAGCC
ATAGCGGATG GCCCTTCCAT GGATATGGGA GAGCTAGCTC TTGGGAGAAA TATTTTCATT
GGTTTTCTTC CGTGGGAAGG ATACAACTTT GAAGACGCAA TAGTAGTTAG TCAAGAATTA
TTAGAAAACG ATGCCTTTAC ATCGATACAC ATAGAAGTTT TTGAAACGAA AGCTATGGAT
ACTCAATTGG GTCCCGAAGA AATAACTGCA GATATTCCAA ATGTCAAAAA AGAACTTTTA
AGGAATTTAG ATGAAGAAGG TATAGTTAAA ATTGGTTCTT ACGTATCTTC TGGGGATATC
CTGGTAGGAA AAGTTACCCC AAGAGGAGAA TCAGATACTA CTCCCGAAGA AAAGCTTATT
AAATCCGTGT TTGGTGATAA AGGTAGAGAC ATTAAAGATT CATCTCTAAC GGTTCCTCAT
GGAATTGAGG GAAGGGTTAT AGACGTTCAG ATCTTTGACA GGAAAGATAT TCCTTCTTTA
GAAATCGGCG TAAATAAATA CGTTAAAGTT TTCATAGCTA CAAAAAAGAC ACTACAAGTT
GGAGATAAAT TAGCGGGTAG GCATGGAAAC AAAGGTGTTA TTTCAACCAT TTTGAACAAA
GAAGATATGC CATTCCTACC AGATGGAACA CCTTTGCAAA TGTTGCTTTC ACCTCTAGGA
GTTCCGTCAA GGATGAATAT AGGACAAGTT TTGGAACTTC ATTTAGGGTG GCTATCGATG
TTAACTAACG ATTACTACGC CACACCTATT TTTGATGGTG CGACTGAATC TGAAATCATG
GATGAATTAT CTAAAGTAAG AGAAGAACAC GAGTTATATT TAGGCGATGA TCCTGATCAG
CCCAACGGTA AAATTGTTCT TAGAGATGGT CGAACAGGTG AACCATTCGA TTTTCCAGTG
GCGGTAGGAT CCATGTATAT GTTGAAATTG TCCCATATAG CAAAAGATAA AATTCATGCA
AGATCGACGG GTCCGTACTC TTTAATTCAC CAACAACCAT TAGGTGGTAA AGCCCATTTT
GGTGGACAGA GATTTGGGGA AATGGAGGTA TGGGCTCTAG AAGCGCATGG AGCTGCTCAT
ACCCTAAACG AAATGTTAAC TTATAAATCT GATGATATTA AAGGTAGGAA TGAAGTTTAC
AAAGCAATAT TAAAAGGAGA AAATCTTCCC GAACCGGGGA TTCCTGAAAG TTTTAAAGTT
TTAACAAAAG AATTACAAGG ACTAATGTTG GATATAAAAC TTTACGATGA AGATGGGAAT
GAGCTAGATG TTGACAGACT CTAA
|
|---|
| Protein sequence | MNTVVREVGR RERKFFGKVP EKTEIYEDLV KIQKDSFRDF LDKKIMESIK RYMPIKIPVK
ASGKKNKEFL IDFVDVKFED SSFSENECRD KGLTYAGKAY LKVRITDSAT GEMIEKDDIF
LCNIPYMTER GIFIVNGAER VIVNQLVRSP GVYFIKEEET DTSKEMFIAH FLPIKGAWLE
ILYNPNPGKE VLQVRIDRKR KFNFFLFLRA LGYENDLDIL RLFPKEIDLD DEVELSNYNN
CTVLSDLSFQ ELDDMDPPRK STYGMKLYEV LELLKKYEIK SVTVAHLVAE ITLEKMKKRY
EKEERLTSLE AYKEIFSKLK PTEIPRAQKA KEEIEDMYFN PEKFDFSQIG RQKIQVKLRK
AYIDYLREVE KKDISEDMED KIKYPIKTFA VDKLDIILSA RYLLHVKENI EGLDTRDHLG
NKRVRSVGEL MQIEFERAFS KMIQHAPEKL AGVQSINKIS PQSLINSRSI MTAFHQFFAS
SQLSQFLDQV NPLAELTHKR RLSAIGPGGL KREHAKFEVR DVHHSHYGRM CPIETPEGAN
IGLITSMAIL AKVDEYGFLK TPYYRVKHAK VDLNNIVYLS ADEEELYRIA PASAEIGEDG
SLVEEYIEAR YLGKVSLFHK DEIEYISVTP KQIASVSAAL IPFLEHDDAN RALMGSNMQR
QAVPLLRPQA PFVGTGVEWL AARDSGYLIM AKHKGIVDYV DGRKIVITRL DEENNVLKDS
NDEPLKDEYT LLKYVRSNQD MCINQVPIVN VGDVVTKGQA IADGPSMDMG ELALGRNIFI
GFLPWEGYNF EDAIVVSQEL LENDAFTSIH IEVFETKAMD TQLGPEEITA DIPNVKKELL
RNLDEEGIVK IGSYVSSGDI LVGKVTPRGE SDTTPEEKLI KSVFGDKGRD IKDSSLTVPH
GIEGRVIDVQ IFDRKDIPSL EIGVNKYVKV FIATKKTLQV GDKLAGRHGN KGVISTILNK
EDMPFLPDGT PLQMLLSPLG VPSRMNIGQV LELHLGWLSM LTNDYYATPI FDGATESEIM
DELSKVREEH ELYLGDDPDQ PNGKIVLRDG RTGEPFDFPV AVGSMYMLKL SHIAKDKIHA
RSTGPYSLIH QQPLGGKAHF GGQRFGEMEV WALEAHGAAH TLNEMLTYKS DDIKGRNEVY
KAILKGENLP EPGIPESFKV LTKELQGLML DIKLYDEDGN ELDVDRL
|
|---|
| |