| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5952 |
|---|
| Symbol | |
|---|
| ID | 5751573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6634600 |
|---|
| End bp | 6640554 |
|---|
| Gene Length | 5955 bp |
|---|
| Protein Length | 1984 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641301084 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_001566965 |
|---|
| Protein GI | 160901383 |
|---|
| COG category | [L] Replication, recombination and repair
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit
[COG1121] ABC-type Mn/Zn transport systems, ATPase component |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACG GTCTGATTCG AATTCGCGGC GCACGCCAGC ACAATCTCCA GAACCTGGAT
CTCGACATCC GTACCGGCGA GCTGACCGTG GTCACGGGGC CCAGCGGCTC GGGCAAGTCC
AGCCTGGTGT TCGACACCCT GTATGCCGAA GGCCAGCGCC GCTATGTCGA GACCTTCTCG
GCCTATGCGC GCCAGTTCCT GGACCGCATG GACAAGCCGG CCGTGGACCG TGTGGAGGGG
GTGCCGCCGG CCATCGCCAT CGACCAGACC AATCCCGTCC GCAACTCGCG CTCCACCGTG
GGCACGATGA CCGAGCTCAA CGACCACCTG AAGCTGCTGT TCGCGCGCGC AGCCCAGCTG
TTCGACCGCG ACACCGCCGT GCCCGTGCGC CACGACACGC CCGACAGCGT GCTGGAGGAG
CTGGCCGAGC GTTGCCGGCA GGCCGGTGAT CCGCGCATCG CCATCACCTT CCCCGTCGAG
CTGCCCGCCA ACACCACGGC CGCCGAGGTG GAGCAATGGC TGTCGGCCAG CGGCTTCACC
AAGGTCCAGG CCGAGCGCGA GGCCGAGAAG GCCGGCGCCG TGGAGCCTGC CGCCGACGCC
AAGGGCAAGA AGGCCAAGGC GGCGCCGCTC AAGGTCAAGA TGCTGGACGT GGTGGCCGAC
CGCTTCCGCC TGGGCAATGT GGAGCGGGCC CGCGCCTACG AGGCCATCGA GGTGGCACTC
AAGCGCGGCA GCGGCCACAT GACGGTCTAT GTGCTGCCTG AATCCGCCGT GGAAGCCGCA
GGTGCCCAGC CCACCGAGCC CCAGCTGTGG AAGTTCTCGC TGGGCCTGCA CTGCCCCGAA
AGCGGCCTGA GCTACCAGGA GCCGATTCCC TCGCTGTTCT CCTTCAACTC CGCCGTGGGC
GCCTGCGAGG CCTGCCGTGG CTTTGGCCGC GTGATCGGCG TGGACTGGGG ACTGGTCATT
CCCAACGACA AGCTCACCCT GCGCACGGGC GCCATCAAGC CCGTGCAGAC ACCGGCCTGG
AAGGAGATCC AGGACGACCT GATGCGCCAC GCCGAGGCCG AAGGCATTCC GCGCGACACG
GCCTGGGCCA AGCTCACCGA CGCGCAGAAA AGCTGGGTGC TGGACGGCTC GCCCAACTGG
AATGGCAAGT GGACCCAGAC CTGGTACGGC ATCAAGCGCT TCTTCGAATA CCTGGAGAGC
AAGGCCTACA AGATGCACAT TCGGGTGCTG CTGTCCAAGT ACCGCAGCTA TACCGAATGC
CCCACCTGCG GCGGCGCGCG CCTGAAGACC GAAAGCCTGC TGTGGCGCCT GGGCGGCAAG
CAGGCCGCCG ATGCCGTGCT GCCGCCCGGC GACGAAGGCC GCTACCGCCG CTTCATGCCG
AAGGGCGTGG CATGGAGCCG CGAGCAGCTG GACGCGCTGC CGGGCCTGTG CCTGCACGAC
CTGATGCAGC TGCCCCTGGT GCGGCTGCGT GACTTCTTCC AGCAGCTGGC GCCGGCAGTC
GACGCCCCAT TGCATGACGG CGAGGCCCAG GCCCTCAAGA TGCTGCACGC CGAAATCATG
GCGCGCGTGC AGTACCTGTG CGACGTGGGC ATCGGCTACC TCACGCTGGA CCGCCAGAGC
CGCACGCTGT CGGGCGGCGA GGTGCAGCGC ATCAACCTGA CCACGGCCCT GGGGACCTCG
CTGGTCAACA CCCTGTTCGT GCTCGACGAG CCCAGCATCG GCCTGCACCC GCGCGACATG
GAACGCATCA CCGAGGCCAT GCAGCGCCTG CGCGATGCGG GCAACACCCT GGTCGTGGTC
GAGCACGACC CGGCCGTGAT GTTCGCCGCC GACCGCATGA TCGACATGGG CCCCGGCCCC
GGCGCGCGCG GCGGCCAGAT CGTGTTCGAC GGCACGCCCG AGGACCTGCG CCATGCCGAC
ACGCTGACCG GCGCCTACCT GGGTGGCCGC AAGCAGGTGG GCTTCGGCCT CAAGCGCATG
GTGACCGAGT CCACGCCACG CCTCATCCTC GAAGGCGCGC GCGAGCACAA CCTGCGCGGC
ATCGACGTGG ACTTTCCGCT GCAGCGCCTG GTCACCATCA CCGGCGTCAG CGGCTCGGGC
AAGTCCACGC TGATCCAGGA TGTGCTGGTG CCCGCGCTGA TGCGCCACTT CGGCAAGCCC
ACGGATGCGG CCGGCGCCTT CGAGCGCCTG CTGGGCGCCG ACCACCTGAG CGACGTGATG
TTCGTGGACC AGTCGCCCAT CGGCAAGACG GCGCGCTCCA ATCCGGCCAG CTACGTGGGC
GCCTGGGACT CCATCCGCGA GCTGTTCGCC ATTGCGTCGC TGTCGCGCCA GCGCGGCTAC
ACGGCCGCCA AGTTCAGCTT CAACAGCGGC GACGGCCGTT GCCCCACCTG CGGCGGCTCG
GGCTTCGAGC ATGTGGAGAT GCAGTTCCTC TCCGACGTCT ACCTGCGCTG CCCCGACTGC
AACGGCACGC GCTACCGCCC CGAGATCCTG GAAGTCACGA TCGAGCGCCA CGCGGCCGGC
GAGCTGCAGC CGCGCAAGCT CAACGTGGCC GATGTGCTGG AGCTCACCGT GGCCGAGGCG
GCCCTGCTGT TCGCCCAGGA CCGCGAGGTC ATCCGCGCCC TGCAGCCCAT CGTCGATGTG
GGCCTTGAAT ACGTGAAGCT GGGCCAGCCC GTGCCCACGC TGTCGGGCGG CGAGGCCCAG
CGCCTCAAGC TCGCGGGCTT CCTGGCCGAG GCTGCCAAGT CCCAGGCCAA GTCGAAGCAG
GCGCTGGCCA AGAAGGGCAC ATTGTTCCTG TTCGACGAGC CCACCACGGG CCTGCACTTC
GACGACATCG CCAAGCTCAT GCGCGCGCTG CGCAAGCTGC TGGAGGCCGG GCATTCGCTG
ATCGTCATCG AGCACAACCT CGACGTGATC CGCGCCAGCG ACTGGCTGAT CGACCTCGGC
CCCGAAGGCG GCGACGGCGG CGGCGCCATC GTGGCCCAGG GTACGCCCGA GGAAGTGCGC
CAGATTCCTG GCTCGCACAC GGCCCAGGCG CTGCGCGAGT ACGACCTGGC CATGGGCGTG
GGCGGCGAGG CGGTGCGCGA GGTCGCCCCC ATGCTCTACA AGAGCCAGCG CAAGGCGCAT
GCCATGTCGG GCGCCGCGGC CAGGAATGCC ATCGAGATCG TCAACGCCAA GGAGCACAAC
CTCAAGCAGC TGTCGGTGGA GATCCCGCGC GGCAAGTTCA ACGTGGTGAC GGGTGTCTCG
GGCTCGGGCA AGTCCACGCT GGCCTTCGAC ATCCTGTTCA ACGAAGGCCA GCGCCGCTAC
CTGGAGTCGC TGAACGCCTA TGCGCGCTCC ATCGTCCAGC CTGCGGGCCG GCCCGAGGTG
GACGCGGTCT ACGGCATTCC GCCCACCGTG GCCATCGAGC AGCGCCTGTC GCGCGGCGGG
CGCAAGTCCA CCGTGGGCAC GACCACCGAG GTCTGGCACT TCCTGCGCCT GCTCTACGTC
AAGCTGGGCA CGCAGCACTG CATCCACGAC GGCGCCGCCG TGCAGCCGCA GACGGCGGAA
AGCATCGCGG CCCAATTGCT CACGCAGTTC AGGGGCCAGA CCATCGGCCT GCTGGCGCCG
CTGGTGGTCA ACCGCAAGGG CGTCTACACC GAGCTGGCCG ACTGGGCACG GCCGCGCGGC
TACACCCATC TGCGCGTGGA CGGCGAATTC CTGCCCACCA CGGGATTCCC GCGCATCGAC
CGCTTCAAGG AGCACACCAT CGAACTGCCC GTGGCCAGCG TCACCGTCAC GGCGGCCAAC
GAGCGCGAAC TGCGCGGCCA CCTGGCGCAG GCGCTGGAAA CAGGCAAGGG CGTGCTGCAT
GTGCTGTCCG GCCTGGACAA CCTGGCCGAT GCCATGGCCG GCGGCCGGAG CACGGCCGGC
ATCGGCAGCC TGCAGGTGTT CTCCACCCAG CGCGCCTGCC CGGTCTGCGC CACCAGCTAT
GCCGAGCTGG ACCCGCGCCT GTTTTCCTAC AACAGCAAGC ACGGCTGGTG CCCCGACTGC
GTGGGCACGG GCGTCAAGCT CACCAAGGAC CAGCGCAAGG TCTATGACGA CACCCTGCTG
GTCGAGGACA ACCGGGGCCG GGAGGTCAAG TTCGAAGGCC AGGAAATCGA AGACCTGGCC
GAAGTGACCT GCCCCACCTG CCAGGGCACA CGCCTGAACG CCACGGCGCG CGCCGTGCGC
TTCCATGGCG TGGGCATTGC CGAGATCGCC CAGCTGTCGG TCAACGACGT GCGCAAATGG
GTGCAGGCGC TGGCGATGTC GGGCCGCGAG GCCGACATTG CCCGCGACCT CATCCCCGAG
ATCCAGAGCC GCCTCGAATT CCTCGAGGAA GTGGGCCTGG GCTACCTGAC GCTGGACCGT
GGCGCGCCCA CGCTGTCGGG CGGCGAGGCC CAGCGCATCC GCCTGGCCGC GCAACTGGGC
AGCAACCTGC AGGGCGTGTG CTATGTCCTG GACGAGCCCA CCATCGGCCT GCATGCACGC
GACAACCAGA TCCTGCTCAA CGCCCTGCAC AAGCTGGGCG ACAAGGGCAA CACCCTGGTC
GTGGTCGAGC ATGACGAGGA CACCATCCGC CGCGCCGACC ACATCATCGA CATCGGCCCC
AGCGCCGGCA TACGCGGCGG CCGCCTCGTG GCCCAGGGCA CGGCGGCCGA CATCATGGCG
GCCGAGGACT CCATCACGGG CCGCTACCTG CTGCATGCCA TGCGCCACCC GTTCCAGCCG
CGCCGCTGGG TGGGAGAAGG CCAGCCGCCG CAGGCGGCCG CCGAGCTTGC CGCCGTGGCC
GAACCGGTGC CGGAACCCGC GCCTGTCAAG GTATCCAAAT CCAAAAAGAA GGCCGCGCCT
GTCGTTGTCG AAGCCGAACC CGCGTCCGAC GCACTGGGCT GGCTGACCGT GCGCGGCGCC
CATTTGCACA ACCTGCAGAA CGTGGATGCG CGCGTGCCGC TCAAGCGCCT GGTGGCCGTC
ACCGGCGTCA GCGGCTCGGG CAAGTCCACG CTGGCGCGCG ACGTGATGCT GGCCAATGTG
GCCGCCTGGG TCGGCCAGCG CGCCACCAAG GCCGGGCGCG ATGCCATGGA CGCCGGCAAG
GCGCCGCCGC TGTCCGGCTG CAAGGGCCTG CAGGGCTTCG AGGGCATAGA CCGCGTGCTC
GAGGTGGACC AGACCCCCAT CGGCAAGACC CCGCGCAGCT GCCCGGCCAC CTACATCGGC
TTCTGGGACA CCATCCGCAA GCTCTACGCC GAAACGCTGG AGGCCAAGGC CCGCGGCTAC
GCGGCCGGCC GCTTCTCGTT CAACACCGGC GAAGGCCGCT GCCCGGCCTG CGAGGGCCAG
GGCATGCGCA CCATCGAGAT GAGCTTCCTG CCCGACGTGA AGGTGCCCTG CGAGGTCTGC
CACGGCGCGC GCTTCAACCC CGAGACCCTG GCCGTCTCCT GGCGCGGCAA GAGCATTGGC
GACGTGCTGC AGATGGAGGT GGACGAGGCC GTCGAGTTCT TCGCCAGCAT GCCCAGCATC
GCCCACCCGC TGCAGCTGCT CAAGGACGTG GGACTGGGCT ATCTCACGCT GGGCCAGCCC
TCGCCCACGC TGTCGGGCGG CGAGGCCCAG CGCATCAAGC TCGTCACCGA GCTGACCAAG
GTGCGCGACG ACGTGACCCG GCGCGGCAAC AAGGCGCCGC ACACGCTCTA TGTGCTGGAC
GAACCCACGG TGGGCCTGCA CATGGCCGAT GTGGACAAGC TCATCCGTGT GCTGCACCGC
CTGGTGGATG CGGGCCACAG CGTGGTCGTC ATCGAGCATG ACCTGGACGT GATCGCCGAG
GCCGACTGGA TCATCGACCT CGGCCCCGAA GGCGGCAAGG ACGGCGGCCG CATCATTGCG
GCCGGCACGC CCGAGGATCT GGTGGCTGCG GGCACGCACA CGGGCAAGGC GCTCAAGCCC
GTGCTGGCTC GTTGA
|
|---|
| Protein sequence | MTHGLIRIRG ARQHNLQNLD LDIRTGELTV VTGPSGSGKS SLVFDTLYAE GQRRYVETFS
AYARQFLDRM DKPAVDRVEG VPPAIAIDQT NPVRNSRSTV GTMTELNDHL KLLFARAAQL
FDRDTAVPVR HDTPDSVLEE LAERCRQAGD PRIAITFPVE LPANTTAAEV EQWLSASGFT
KVQAEREAEK AGAVEPAADA KGKKAKAAPL KVKMLDVVAD RFRLGNVERA RAYEAIEVAL
KRGSGHMTVY VLPESAVEAA GAQPTEPQLW KFSLGLHCPE SGLSYQEPIP SLFSFNSAVG
ACEACRGFGR VIGVDWGLVI PNDKLTLRTG AIKPVQTPAW KEIQDDLMRH AEAEGIPRDT
AWAKLTDAQK SWVLDGSPNW NGKWTQTWYG IKRFFEYLES KAYKMHIRVL LSKYRSYTEC
PTCGGARLKT ESLLWRLGGK QAADAVLPPG DEGRYRRFMP KGVAWSREQL DALPGLCLHD
LMQLPLVRLR DFFQQLAPAV DAPLHDGEAQ ALKMLHAEIM ARVQYLCDVG IGYLTLDRQS
RTLSGGEVQR INLTTALGTS LVNTLFVLDE PSIGLHPRDM ERITEAMQRL RDAGNTLVVV
EHDPAVMFAA DRMIDMGPGP GARGGQIVFD GTPEDLRHAD TLTGAYLGGR KQVGFGLKRM
VTESTPRLIL EGAREHNLRG IDVDFPLQRL VTITGVSGSG KSTLIQDVLV PALMRHFGKP
TDAAGAFERL LGADHLSDVM FVDQSPIGKT ARSNPASYVG AWDSIRELFA IASLSRQRGY
TAAKFSFNSG DGRCPTCGGS GFEHVEMQFL SDVYLRCPDC NGTRYRPEIL EVTIERHAAG
ELQPRKLNVA DVLELTVAEA ALLFAQDREV IRALQPIVDV GLEYVKLGQP VPTLSGGEAQ
RLKLAGFLAE AAKSQAKSKQ ALAKKGTLFL FDEPTTGLHF DDIAKLMRAL RKLLEAGHSL
IVIEHNLDVI RASDWLIDLG PEGGDGGGAI VAQGTPEEVR QIPGSHTAQA LREYDLAMGV
GGEAVREVAP MLYKSQRKAH AMSGAAARNA IEIVNAKEHN LKQLSVEIPR GKFNVVTGVS
GSGKSTLAFD ILFNEGQRRY LESLNAYARS IVQPAGRPEV DAVYGIPPTV AIEQRLSRGG
RKSTVGTTTE VWHFLRLLYV KLGTQHCIHD GAAVQPQTAE SIAAQLLTQF RGQTIGLLAP
LVVNRKGVYT ELADWARPRG YTHLRVDGEF LPTTGFPRID RFKEHTIELP VASVTVTAAN
ERELRGHLAQ ALETGKGVLH VLSGLDNLAD AMAGGRSTAG IGSLQVFSTQ RACPVCATSY
AELDPRLFSY NSKHGWCPDC VGTGVKLTKD QRKVYDDTLL VEDNRGREVK FEGQEIEDLA
EVTCPTCQGT RLNATARAVR FHGVGIAEIA QLSVNDVRKW VQALAMSGRE ADIARDLIPE
IQSRLEFLEE VGLGYLTLDR GAPTLSGGEA QRIRLAAQLG SNLQGVCYVL DEPTIGLHAR
DNQILLNALH KLGDKGNTLV VVEHDEDTIR RADHIIDIGP SAGIRGGRLV AQGTAADIMA
AEDSITGRYL LHAMRHPFQP RRWVGEGQPP QAAAELAAVA EPVPEPAPVK VSKSKKKAAP
VVVEAEPASD ALGWLTVRGA HLHNLQNVDA RVPLKRLVAV TGVSGSGKST LARDVMLANV
AAWVGQRATK AGRDAMDAGK APPLSGCKGL QGFEGIDRVL EVDQTPIGKT PRSCPATYIG
FWDTIRKLYA ETLEAKARGY AAGRFSFNTG EGRCPACEGQ GMRTIEMSFL PDVKVPCEVC
HGARFNPETL AVSWRGKSIG DVLQMEVDEA VEFFASMPSI AHPLQLLKDV GLGYLTLGQP
SPTLSGGEAQ RIKLVTELTK VRDDVTRRGN KAPHTLYVLD EPTVGLHMAD VDKLIRVLHR
LVDAGHSVVV IEHDLDVIAE ADWIIDLGPE GGKDGGRIIA AGTPEDLVAA GTHTGKALKP
VLAR
|
|---|
| |