| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5935 |
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| Symbol | |
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| ID | 5751556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 6607614 |
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| End bp | 6610736 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641301067 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001566948 |
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| Protein GI | 160901366 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGGC CAGTCTTTCC AGATTCAGAA AAGGGAATCA AAAGCCGGCA TGCAAGGCAA
GGAAAAGGAA CAATGCCGGG GCCAGGCCAA GGCCCTGCCG GATATTTCAA ACTGAAGCCC
GGCCATGCGC TGCTGCTCTC CGTGCTGGTG TGCTGGCAGT CCGAGGCCCA GCAGGGGCAG
CAGGTCAAGG AAGTCACGAC CTCCACGTCC ACCGGCCAGT GGCAGCCCAC GCCGGCTGCC
GTCGACTTCG ACCCCAGCTT TCTGAACACC GGCAAGCAGA CCATTGACGT CTCGCGCTAC
TCGCGCGCCA ACGTGGTCAT GGCAGGCAGC TACAACCCAG ACATCTACAT CAACGGCAAC
TGGGTTGGCC GCCGCGAAGT GCAGTTCAAG GCCCAGGCCG GCTCGCAGGA CGCGCTGCCC
TGCCTGGACA AAGCACTGCT GGAGAAGGTG GGCATCGACC TCTCGCGCCT GCCGCCCGAG
GCCGCCTTGA AGCTGGCGGC CGACGGTGGC TGCAACCGGC TGGACCAGAT CATCGCGGGC
GCCTTCACCA GTTTCGATTT CGGCAAGCAG CGACTGGACC TGAGCGTGCC CCAGGCCTCG
CTGCGCCGCT CGGTGCGCGG CTATGTCAGC CCCGACCAAT GGAGCGCCGG CGTGCCTGTC
GGCCTGCTCG GCTACCAGTT CAACACCTAC CACGGGCGCT CCAGCAACGC AGAAAACACC
ACGCAGAGCT ACCTGGGCCT GAACGGCGGC GTCAACATCG ACCGCTGGCA TTTCCGGCAC
AACGGCTCCT TCAGCTGGGC GGACACTGGA CGGGGCAACT ACCAGAACAT CTCCACCTAC
GCACAGCGCG ACATTGCCGA CTGGTCTTCC CAGCTCATAC TGGGCGACAC CTACACGGGT
GGCGACCTGA TGGACTCCAC CTCGTTTCGC GGCATACGCT TGAACAGTGA CGACCGCATG
CTGCCCGACT CCCAGCGCGG CTACGCGCCC GTGGTGCGCG GCGTGGCCAA CACCAATGCC
CGAGTCACCA TCACGCAGAA CGGCATCAAG CTCTACGAAA CCACGGTGGC GCCCGGCGCC
TTCGTCATCA ACGACCTCTA CCCCACCGGC TACGGCGGCG ACCTGCAAGT CAGCATCACC
GAGGCCAATG GCGCCGTGCG CAGCTTTGCC GTGCCCTACG CGGCCGTGCC GCTGTCGCTG
CGCGAGGGGC AGGACCGCTA CAGCCTCACG GCGGGCGTGG TGCGCCACCT GCCCAATACC
TCGCCGCTGT TCTCGCAGGC GACCTGGCAG CACGGCTTCA CCAACATGCT GACCGGCTAC
GGAGGTGTGT CCGTGGCCAA GGGCCATATC TCGCCCATGA TTGGCGCGGC GCTCACCACG
CCCTGGGGTG CCTTTGGTGC AGACATCACG CACGCCTCCA CCAGCATTCC CAATGATGGC
TCCTTTTCCG GACAGAGCTT GCGTGCCAGC TACGCCAAGT CCTTTGCGCA GACCGGCACC
CACGTGGCCA TTGCCGCCTA TCGCTACTCC ACCAACGGAT TCTTCGGCCT CAACGACGCC
ATGCGCGCGC GGGATCAGGC CAATCTGCTA CGGCCCTCCA CGGACCTGTA CCGGCCTCGC
AACCGCGCCT CCCTGGTCAT GGGCCAGCAG TTTGGCCCCG GGGGAGGCAG CCTCAGCCTC
ACGGCGTCCA CTGCCAAGTA CTGGAACCGC CAGGGCTCCA ACGTCGACTA CGCCATTGGC
TACAGCAACT CGTTCCGCAA CATCTCCTAC AACCTCTCTG CGGCGCGCCA GCGCGATGCC
TGGGGACAGT CCAACACGTT CCTGCACGTG GGCCTGTCGA TTCCGCTCAG CATGGAGCGC
GGCATGATGC TCTCCACCAA TACCAACCGC GACTCGCGCG GCCGCGTGCA GGCCCAGGCC
AATCTGTCCG GGCTGCTGGG CGACGACAAC GCCATCTCCT ACGGCCTCAG CGCCAACCAC
AACACCGGTG GCATGAATGG CAGCAGCACC AGTGCCAGCG CCAACGCCAC CTACCGCGCA
TCGCAGACCG AACTCAGCGG CAGCGTCAGC GCCAGCAGCG GCTACCAGCA GTTCTCGGTA
GGCGCGCGTG GCGCCATCGT GGCCCACCCG GGCGGCGTGA CGCTGTCGCA ATCGGTATCT
GACACCTTTG CCATCGTGGA GGCCAAGAAC GCGGAAGGCG CGCGCATCAA CAACGCGCCC
GGCGTGAAGG TGGACAGCCG GGGCTATGCC GTCGTCCCGT ATCTGACGCC GTTCTCGATG
AACGAGGTCT CCATCGATCC CAAGGGCCTG TCGACGGACG TGGAACTCAA GGAAACCAGC
CAGCACGTCG CGCCGCTGGC CGGCGCAGTG CCGCTGCTGG TGTTCAAGAC AGCCTATGGC
CGCTCGGCCG TGATCCGCGC GCGGCAGGCC GGCAACATGC CTGTGCCCTT TGGCGCCAGC
GTGCTGGACA TGGACGGCAA GGAGTTGGGC ATGATCGGCC AGGCCGGCAA GCTTCTGGCG
CGCGGGCTGT CAGACCAGGG CGAGCTGCAG GTGCAATGGA AGACCGACAC CGGCATGGTG
GGCTGCAACC TCTCCTATAC CCTTCCTGAA AGAAAGCGCA GCACCACCTA CCAGCCGCCG
CAAAGCCTGG AACTGCCCTG CGTGGCCAGC AGCAACCTGG TGCCTGTGAT GGTGGCGGCC
ACCTCCAATC CTGCCAACGC GGCAATGCCT GCCGAAGTGA GGAACACAGC CACTTTGTCC
ACCCAGACGG TCATGGCAGC ATCGGCGCCG CCGCACTCCA CGCCTGCGCT CAAGGCAACA
GATTCCACTT CCGCCATGAC GATGGCGGGT GCCCAGCCCG ATACACGGGC GAGGCCATCT
GCACAGGCCG CCAAAGTTGA AAGGGCGGCG CTTGAGCGCA CGCTTGACGG CCTGCGCATG
AGCATCAGGA TCAGCGCGCT ACCTTCCGGC AATCTGGCAG CCGACAAGGG CGACAGGAGT
ACCCCGCTTC AAAGCAAGGC CTCCTCGGAT TCCCCGATTC GCGACGCCAA GGCCAGCCAC
CCGATAGCGG TTCTTCAGCC CAGCTTGAAG ATCAGGGTCC TGGCATCGGC CGATCAGACA
TAA
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| Protein sequence | MIRPVFPDSE KGIKSRHARQ GKGTMPGPGQ GPAGYFKLKP GHALLLSVLV CWQSEAQQGQ
QVKEVTTSTS TGQWQPTPAA VDFDPSFLNT GKQTIDVSRY SRANVVMAGS YNPDIYINGN
WVGRREVQFK AQAGSQDALP CLDKALLEKV GIDLSRLPPE AALKLAADGG CNRLDQIIAG
AFTSFDFGKQ RLDLSVPQAS LRRSVRGYVS PDQWSAGVPV GLLGYQFNTY HGRSSNAENT
TQSYLGLNGG VNIDRWHFRH NGSFSWADTG RGNYQNISTY AQRDIADWSS QLILGDTYTG
GDLMDSTSFR GIRLNSDDRM LPDSQRGYAP VVRGVANTNA RVTITQNGIK LYETTVAPGA
FVINDLYPTG YGGDLQVSIT EANGAVRSFA VPYAAVPLSL REGQDRYSLT AGVVRHLPNT
SPLFSQATWQ HGFTNMLTGY GGVSVAKGHI SPMIGAALTT PWGAFGADIT HASTSIPNDG
SFSGQSLRAS YAKSFAQTGT HVAIAAYRYS TNGFFGLNDA MRARDQANLL RPSTDLYRPR
NRASLVMGQQ FGPGGGSLSL TASTAKYWNR QGSNVDYAIG YSNSFRNISY NLSAARQRDA
WGQSNTFLHV GLSIPLSMER GMMLSTNTNR DSRGRVQAQA NLSGLLGDDN AISYGLSANH
NTGGMNGSST SASANATYRA SQTELSGSVS ASSGYQQFSV GARGAIVAHP GGVTLSQSVS
DTFAIVEAKN AEGARINNAP GVKVDSRGYA VVPYLTPFSM NEVSIDPKGL STDVELKETS
QHVAPLAGAV PLLVFKTAYG RSAVIRARQA GNMPVPFGAS VLDMDGKELG MIGQAGKLLA
RGLSDQGELQ VQWKTDTGMV GCNLSYTLPE RKRSTTYQPP QSLELPCVAS SNLVPVMVAA
TSNPANAAMP AEVRNTATLS TQTVMAASAP PHSTPALKAT DSTSAMTMAG AQPDTRARPS
AQAAKVERAA LERTLDGLRM SIRISALPSG NLAADKGDRS TPLQSKASSD SPIRDAKASH
PIAVLQPSLK IRVLASADQT
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