Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5741 |
Symbol | |
ID | 5751362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 6389661 |
End bp | 6392801 |
Gene Length | 3141 bp |
Protein Length | 1046 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641300873 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001566754 |
Protein GI | 160901172 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.194313 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0197837 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCACAGT TCTTCATTCA CCGGCCCGTC TTTGCCTGGG TCATCGCGTT GTTCATCGTG CTGCTGGGCG TGCTTGCCAT TCCGCAATTG CCGATCTCGC GCTATCCCAC GGTGGCGCCG CCCACGGTGA GCCTGTATGC CACCTATCCG GGCGCCACGC CCAAGACGCT CAATGACTCC GTGGTCTCGC TGATCGAGCG CGAGCTGTCC AGCGTCCGCC ACCTGCTGTA CTTCGAGTCC TCGGTGGACA CCTCGGGCTC GGCCGAGATC AAGGCCACCT TCAAGCCCGG CACCAACCCC GAGCTGGCCC AGGTGGATGT GCAAAACCGC ATCAAGGCCG TGGAGCCGCG CCTGCCGCAG GCCGTGCGCC AGAACGGGCT GCAGGTGGAG TCGGCCACGT CGAGCTTTCT GCTGCTGGTG GGCCTGATCT CGCCGGGCGG CGAGTTCGAC GAGCTGGCAC TCAATGACTA CATGGCGCGC AATATCGTCG AGGAGCTGCG GCGCATCGAG GGCGTGGGCC GCGTGCAGCT GTTCGGCACC GAGCGCGCCA TGCGCGTCTG GGTCGATCCG GCCAAGCTGA TCTCCTACGG GCTGTCCATG GGCGACCTCA CCCAGGCCAT CCAGCAGCAG AACATGCAGA TCGCCCCGGG CCGCGTGGGC GATGCGCCCA TCGCCCCGGG CCAGCGCGTG ACCACGCCGC TCACCGTGCA GGGCCAGCTG ACCTCGCCCG AGCAGTTCGC GGCCATCGTG CTGCGCGCCA ATGCCGACGG CTCCCGCCTG GTGCTGGGCG ACGTGGCGCG CGTGGAGCTG GGCGCGCAGT CCTATGCCTT CTCCAACCGC GAGGATGGCA AGCCCGCCAC CAGCGCCGCC GTGCAGCTGT CGCCGGGCGC CAACGCCGTG CGCACGGCCG CCGCGGTGCA AAAGCGCATG GCCGAGCTGG CCTCCATCCT GCCGCGGGGC ATGGAGCACA CCATCTCGTT CAATACCGCG CCCTTCGTCA AGATCTCCAT CGAGAAGGTG GTGCAGACCC TGGTCGAGGC CATGGTGCTG GTCTTCCTGG TGATGTACCT GTTCCTGCAG AACCTGCGCT ACACGCTGAT CCCGGCCATC GTGGCGCCCG TGGCGCTGCT GGGCACCTTC GCCGTGATGC TGGTGGCGGG CTTTTCCATC AACGTGCTGA CCATGTTCGG CATGGTGCTG GCCATCGGCA TCATCGTGGA CGACGCCATC GTCGTGGTGG AGAACGTGGA GCGCCTCATG GCCGAGGAAG GCCTGTCGCC GCGCGATGCC ACGCTCAAGG CCATGAAGGA GATCACGGGC GCCATCATCG GCATCACCCT GGTGCTGACG GCGGTGTTCA TTCCCATGGC GTTCGCCAGC GGCTCGGTGG GCGTGATCTA CCAGCAGTTC ACGCTGTCCA TGGCCGTGTC CATCCTGTTC TCGGCCTTCC TGGCCCTGAG CCTGACGCCG GCGCTGTGCG CCACCTTGCT CAAGCCGGTG GCGGCGGGCC ACCACGAGAA GAAGGGCTTC TTCGGCTGGT TCAACCGCGG CTTCGAGCGG CTGACGAACC GCTACGAGGC CCATGTCACG GGCCTGGTCC GGCGCACGGG CCGCATGATG CTGCTGTTCG CGGCCATCGT GGCCATCCTG GTGTTTGCGC TGCGCCAGCT GCCCTCGGCC TTTCTTCCCG AGGAGGACCA GGGCTACTTC ATGGCGTCCA TCCAGCTGCC GGCCGATGCC ACGGCCGAGC GCACGCTGGA CGTGGTCAAG CGCTATGAGG AGCATGTGGC GCAGCGCCCC GGCATCGCCT CCAGCATCTC GGTGCTGGGC TTCAGCTTCG CGGGCTCGGG CCCGAACGCG GCCATGGCCT TCACCACGCT CAAGGACTGG GACCAGCGCG ACGGCGCCAC GGCAGGCGAG GAAGTCTCGC TCGCGCAAAA GGCCATGGAG CATGCGCCCG AGGGCGCCAT CATGGTGCTG CAGCCCCCGG CCATCGACGA ACTGGGCACC TCCTCGGGCT TCACCATGTA CCTGCAGGAC CGCACGGGCC AGGGCCATGC CGCGCTCAAG TCGGCCACCG ACCAGTTGCT GGCGCTGGCC GGCAGCAGCA GCGTGCTGGG CTCGGCCTAC CAGGACAGCT TGCCCTCGGG CACCAGCGTG CGGCTGGAGA TCGACCGCCA GAAGGCCCAG GCCCTGGGCG TGGGCTTTGC CGCCATCAGC GAGACGCTGT CCACGGCCAT GGGCTCGCTG TACGTCAACG ACTTCCCCAA CGCCGGGCGC ATGCAGCAGG TCATCGTGCA GGCCGACGCG CCCGCGCGCA TGCAGATCGA TGACGTGCTC CGGCTGAACG TGCGCAATGC CTCGGGCGGC ATGGTGCCGC TGGCCGAGTT CGCCACGCCC GTGTGGTCGG AAACGCCGCT GCAACTGGTG CGCTACCAGG GCTTCCTGGC GTCGCGCATC TCGGGCACGC CTGCGCCCGG CACGTCCAGC GGCGCGGCCA TGGCCGAGAT GGAGCGGCTG GCGGCCCAAC TGCCGCCCGG CTTTGCCGTG GCCTGGACCG GCCAGTCGCT GCAGGAGCGC CAGTCGGCCG CGCAGGCGCC CCTGCTCATG GCCCTGTCCA TGCTGGTGGT CTTCCTGGTG CTGGCCGCGC TGTACGAGAG CTGGTCCATC CCGCTGTCGG TGATGCTGGT CGTGCCCCTG GGCCTGCTGG GCGCGGTGGC GGCCGTGCTG CTGCGCGGCA TGCCCAACGA TGTGTTCTTC AAGGTGGGCC TGATCACCAT CATCGGCCTG TCGGCCAAGA ACGCCATCCT GATCGTGGAA TTCGCCAAGC AGCTGCGCGA GGAAGGCCAG GACCTGCGCG AGGCCGCCAT CAAGGCCGCG CGCCTGCGGC TGCGGCCCAT CCTCATGACC TCGCTGGCCT TTGCGCTGGG CGTGGTGCCG CTGATGCTGG CATCGGGCGC CAGCGCCGAG ACCCAGCACG CCATCGGCAC GGGCGTGTTC GGCGGCATGG TCAGCGGCAC GGTGCTGGCC GTGTTCTTCG TGCCCGTCTT CTTCGTCTTC GTCCTTGAAT GGCAGCGGCG CATCGCCGGG CCGCGCGGCA GCGCGCGCCG GCCGCCGCCC GCTGCCGACC CCGGAACCTG A
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Protein sequence | MPQFFIHRPV FAWVIALFIV LLGVLAIPQL PISRYPTVAP PTVSLYATYP GATPKTLNDS VVSLIERELS SVRHLLYFES SVDTSGSAEI KATFKPGTNP ELAQVDVQNR IKAVEPRLPQ AVRQNGLQVE SATSSFLLLV GLISPGGEFD ELALNDYMAR NIVEELRRIE GVGRVQLFGT ERAMRVWVDP AKLISYGLSM GDLTQAIQQQ NMQIAPGRVG DAPIAPGQRV TTPLTVQGQL TSPEQFAAIV LRANADGSRL VLGDVARVEL GAQSYAFSNR EDGKPATSAA VQLSPGANAV RTAAAVQKRM AELASILPRG MEHTISFNTA PFVKISIEKV VQTLVEAMVL VFLVMYLFLQ NLRYTLIPAI VAPVALLGTF AVMLVAGFSI NVLTMFGMVL AIGIIVDDAI VVVENVERLM AEEGLSPRDA TLKAMKEITG AIIGITLVLT AVFIPMAFAS GSVGVIYQQF TLSMAVSILF SAFLALSLTP ALCATLLKPV AAGHHEKKGF FGWFNRGFER LTNRYEAHVT GLVRRTGRMM LLFAAIVAIL VFALRQLPSA FLPEEDQGYF MASIQLPADA TAERTLDVVK RYEEHVAQRP GIASSISVLG FSFAGSGPNA AMAFTTLKDW DQRDGATAGE EVSLAQKAME HAPEGAIMVL QPPAIDELGT SSGFTMYLQD RTGQGHAALK SATDQLLALA GSSSVLGSAY QDSLPSGTSV RLEIDRQKAQ ALGVGFAAIS ETLSTAMGSL YVNDFPNAGR MQQVIVQADA PARMQIDDVL RLNVRNASGG MVPLAEFATP VWSETPLQLV RYQGFLASRI SGTPAPGTSS GAAMAEMERL AAQLPPGFAV AWTGQSLQER QSAAQAPLLM ALSMLVVFLV LAALYESWSI PLSVMLVVPL GLLGAVAAVL LRGMPNDVFF KVGLITIIGL SAKNAILIVE FAKQLREEGQ DLREAAIKAA RLRLRPILMT SLAFALGVVP LMLASGASAE TQHAIGTGVF GGMVSGTVLA VFFVPVFFVF VLEWQRRIAG PRGSARRPPP AADPGT
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