Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5697 |
Symbol | |
ID | 5751317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 6332460 |
End bp | 6334823 |
Gene Length | 2364 bp |
Protein Length | 787 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641300829 |
Product | general secretion pathway protein D |
Protein accession | YP_001566710 |
Protein GI | 160901128 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0549216 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAGC AGCACACGAC CCCGTTCTGG CGCAACACCC TGCACACGCT GGCCGTCAGC GCCATGCTGG CCTGCACCGC TGGCACGACC CAGGCTCAGA CCAACGCACC GGCCGGCGCC ACGCCCAGCC TGCGCCCCGG CGAGCCTGTG ACACTGAATT TCTCGGGCGC CGACATCGAG GCCGTCTCGC GCGCCATCGG CGCCATCACC AACCGCAACG TGGTGGTCGA CCCCCGCGTC AAGGGCCAGA TCACGCTGCT GACCGACAGG CCCGTGCCGC CTGCCACCGC CTACCAGCAG TTCCTGGCCG CGCTGCGCCT GCAGGGCTTC ACCATTGTCG AATCGGCCGG CCTGTACAAG GTCATCCCCG AGGCCGACGC CAAGCTGCAG GCCAGCGAAG TGGCCGTGGG CGCGAGCCGC AGCAGCGCGG GCAGCCAGAT CGTCACCCAG ATCTTCAAGC TCAACTACGA GAACGCGGCC AACCTGGTGC CCGTGCTGCG CCCGCTGATC AGCCCCAACA ACACCATCAA CGTCAACCCG GGCAACAACT CGCTGGTCAT CACCGACTAC GCCGACAACC TGCAGCGCAT CTCGCGCATC GTGGCGACCA TGGATGTGTC CAACGCCACC GATGTCGAAA TCATCCCGCT GCGCCATGCC GTGGCCACCG ACATGGTGGC CCTGGTCTCG CGCCTGATCG AAGGCGGCAC GGCCAGCCCC GGCGGCCTCA CCGTGACCGC CGGCGGCGCC AATATTCCGG GCCAGAGCGA CAACGCCTTC AAGACCTCGC TGATGGCCGA GCCGCGCAGC AACTCCATCG TGCTGCGCGC GGCCAACCCC GCACGCCTGG CCCAGGTGCG CTCGCTGATC GCGCGGCTGG ACCAGCCCGC CATGAACGGC GGCGGCGACC AGGGCAACAT CCACGTGGTC TACCTCAAGA ACGCCGACGC CGTGGCGCTG GCAGCCACCT TGCGCGCAGC CATAGGCGCC CAGGCCACGG CTGCGGGTAC GGCCAGCGGC CAGCCCGGTG CGGGCGGCAC CACGCCGCAG GGCGGCGGCA TGTCCTCCAT TCCCACCTCG CAGCCCGTGG TCTCGCGCGA CTCCAGCGGC ACGGCATCCA TGGGCATGGG CTCGTCCTCG GGCCTGGGCA GCAGCGGAGG GGGCGCCCTG GGCGTGGCCC AGCAGCCGTC CACGGGCGGC ATGGTCCAGG CCGATCCGTC CACCAACTCG CTGATCATCA CCGCCCCGCC GCCCATCTAC CGCCAGATGC GCGCCGTGAT CGACAAGCTC GACGGCCGCC GCGCCCAGGT GCTGATCGAA AGCCTGATCG TCGAGCTCAA GGACAACCGC CTGGCCCAGT TCGGCGTGCA GTGGCAGGCC ATCCTCAGCA ACAACGGCAA GGTGCTGGGC AGCATCGGCA ACAACTCCAG CGTGGCCGGC GCCAACATCC TGAGCCTGCT GAGTGCCTTC AACAAGGACG GCAGCATCAA CGCCAGCGGC ATCACCGGCG ACACGGTGAA CAGCATGCGC GGCACCAACC TGGGCTTCAC GCAGAGCGTC AACGGCAACA CCACGCTGGG CTTTCTGGCC AACTTCCTGC AGAACAGCGG CGACGCCAAC ATCCTGTCCA CGCCCAACCT GATGACGCTG GACAACGAGG AGGCGCGCAT CATCGTGGGC CAGAACGTGC CCATGGTCAC GGGCTCGTAC GCCAGCAATT CCACGGGCGG CACGGTCAAC CCGTTCACCA CGGTGGAGCG CAAGGACGTG GGCCTGATGC TGCGCGTGCG CCCGCAGATC AACGAGAACG GCACGGTGAA GCTGGCCGTG TTCCAGGAGG TCTCCTCGGT GGACGAGTCC ACGCGCAAGG ACACCAACGG CCTGACCACC AACAAGCGCT CCATCGAATC CAACGTGCTG GTCGAGGACG GCAACATCAT CGTGCTTGGC GGCCTGATCG ACGACAACTA CTCCCAGGCC GAGGACCGCA TTCCCCTGCT GGGCGACATT CCCGTGCTCG GCAACCTGTT CCGCAACACC AACCGCAAGC GCAACAAGAC CAACCTGATG GTCTTCCTGC GCCCCGTGGT GATGCGCGAT GCGGCGGCCA CCAATCAGGT CTCCTCCGAG CGCTACGAAG CCATCCGCGC CCAGCAGCAA GGACTGCAGC CCGAGCAGAA CGTGCTGCTG CGCTCGGTCA ACGCCGCGCC CGTGCTGCCC ACGCTGACGC CGCAGCCGGA CCCCGGCACG TTCACCAACC CGGCCGCCAT CGTCAACGTG CCGGGCGCAA AGCCCGAGCT GATCGACTTC ACCCAGCCGC AGCCCGCCGC TCCCGCCGTG CCGGCAGCCC CCGGCGCGCT CTGA
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Protein sequence | MTQQHTTPFW RNTLHTLAVS AMLACTAGTT QAQTNAPAGA TPSLRPGEPV TLNFSGADIE AVSRAIGAIT NRNVVVDPRV KGQITLLTDR PVPPATAYQQ FLAALRLQGF TIVESAGLYK VIPEADAKLQ ASEVAVGASR SSAGSQIVTQ IFKLNYENAA NLVPVLRPLI SPNNTINVNP GNNSLVITDY ADNLQRISRI VATMDVSNAT DVEIIPLRHA VATDMVALVS RLIEGGTASP GGLTVTAGGA NIPGQSDNAF KTSLMAEPRS NSIVLRAANP ARLAQVRSLI ARLDQPAMNG GGDQGNIHVV YLKNADAVAL AATLRAAIGA QATAAGTASG QPGAGGTTPQ GGGMSSIPTS QPVVSRDSSG TASMGMGSSS GLGSSGGGAL GVAQQPSTGG MVQADPSTNS LIITAPPPIY RQMRAVIDKL DGRRAQVLIE SLIVELKDNR LAQFGVQWQA ILSNNGKVLG SIGNNSSVAG ANILSLLSAF NKDGSINASG ITGDTVNSMR GTNLGFTQSV NGNTTLGFLA NFLQNSGDAN ILSTPNLMTL DNEEARIIVG QNVPMVTGSY ASNSTGGTVN PFTTVERKDV GLMLRVRPQI NENGTVKLAV FQEVSSVDES TRKDTNGLTT NKRSIESNVL VEDGNIIVLG GLIDDNYSQA EDRIPLLGDI PVLGNLFRNT NRKRNKTNLM VFLRPVVMRD AAATNQVSSE RYEAIRAQQQ GLQPEQNVLL RSVNAAPVLP TLTPQPDPGT FTNPAAIVNV PGAKPELIDF TQPQPAAPAV PAAPGAL
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