| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5671 |
|---|
| Symbol | |
|---|
| ID | 5751291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 6307299 |
|---|
| End bp | 6308894 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641300803 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001566684 |
|---|
| Protein GI | 160901102 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.880059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0905991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCA TCACTTTCCG ACGCCGCGCC CTGGCGGCCC TGGCCCTGGC CGGCGCGCTG
GCGGGCCTGG CGGCCACGCC GCTGCAGGCC CAGGAGCCGC AGCGCGGCGG CACCCTGATC
GTGGGCAGCA CCCAGGTGCC ACGGCACCTG AACGGCGCCG TGCAATCGGG CATTGCCACG
GCCATGCCTT CCACCCAGCT GTTCGCCAGC CCGCTGCGCT TCGATGACCA GTGGAAGCCC
CAGCCCTACC TGGCCGAGTC CTGGAAGCTG GCCGAGGACG GCAAGTCGCT GACCCTGAAC
CTGCGCAGGA ATGCCGTGTT CCACGACGGC AAGCCCATCA CCTCGGCCGA CGTGGCCTTC
TCCATCATGG CCATCAAGGC CAACCACCCG TTCCAGACCA TGCTGGGGCC CGTGGAGAAG
GTGGACACGC CCGACCCCTA CACGGCCATC ATCCGCATGA ACGCGCCGCA TCCGGCCATC
CTGCTGGCCA TGAGCCCGGC GCTGGCGCCC ATACTGCCCA AGCACATCTA TGGCGATGGT
GCCGACCTCA AGACCCACGC GCGCAACAGC GCCGACGTGG TGGGCTCGGG GCCGTTCAAG
CTGACCGAGT TCCGCGCGGG CCAGCGCATC GTGATGGAGC GCTTCGACAA GTTCTTCCTG
CCCGGCCGGC CCTACCTGGA CAAGCTGGTC TTCAACATCG TGCCCGACTC CTCCAGCCTG
CTGCTGAGCC TGGAGCGCGG CGACGTGCAG ATGGTGCCCT ACCTGCAGGC CTCCATCGAC
CTGAAGCGCC TGTCCACCAA TCCCCAGATC ACGCTGACCG GCAAGGGCTT CGAGGGCATA
GGCTCGATCA ACTGGCTGGC CATCAACACC GACAGGAAGC CGCTGGACGA TGTGCGCGTG
CGCAAGGCCA TTGCGCATGC CATCGACAAG AACTTCATCA CCAAGGCGCT GATGGGCGGC
TTCGCCACCG TGGCCGACGG CCCCATCGTG GCGGCCAGCC CCTTTGCCTC GGCCGACCTG
GTGCGCTATC CGCTGGACCT CAAGAAGTCG GCGGCCCTGC TGGACGAGGC CGGCCTCAAG
CCCGCCTCCA ACGGAGAGCG CTTCAAGATC ACCATCGACT ACCTGCCCGG CACGGACGAG
CAGCAAAAGA ACGTGGCCGA GTACGTGCGC GCCCAGCTCA AGAAGGTCGG CATCGCGGTC
GAGGTGCGGG CCTCGGCCGA CTTCCCTGCC TGGGCCCGGC GCCTGGCCAC GCACGACTTC
GACCTGTCCA TGGACATCGT CTTCAACTGG GGCGACCCGG TCATCGGCGT GCACCGCAGC
TACCTGTCCA CCAACATCAA GCCCGTGGTC TGGACCAACA CCCAGTCCTA CCGCAATCCC
AAGGTGGACG AGCTGCTGAA CACGGCCAGC AGCACGCTGG ACACGGCCGA GCGCAAGAAG
CTCTATGCGG CCTTCCAGAA GACCGTGACG GACGAGCTGC CGGTGATCTT CATCAACAAC
TCGCCCTACC ACACGGCTGC GCGCAAGAAC GTGGGCAACC TGCCGACCAC GATCTGGGGG
CCGGCCTCGC CCTACGACGA GATCTTTCTG AAGTAG
|
|---|
| Protein sequence | MHTITFRRRA LAALALAGAL AGLAATPLQA QEPQRGGTLI VGSTQVPRHL NGAVQSGIAT
AMPSTQLFAS PLRFDDQWKP QPYLAESWKL AEDGKSLTLN LRRNAVFHDG KPITSADVAF
SIMAIKANHP FQTMLGPVEK VDTPDPYTAI IRMNAPHPAI LLAMSPALAP ILPKHIYGDG
ADLKTHARNS ADVVGSGPFK LTEFRAGQRI VMERFDKFFL PGRPYLDKLV FNIVPDSSSL
LLSLERGDVQ MVPYLQASID LKRLSTNPQI TLTGKGFEGI GSINWLAINT DRKPLDDVRV
RKAIAHAIDK NFITKALMGG FATVADGPIV AASPFASADL VRYPLDLKKS AALLDEAGLK
PASNGERFKI TIDYLPGTDE QQKNVAEYVR AQLKKVGIAV EVRASADFPA WARRLATHDF
DLSMDIVFNW GDPVIGVHRS YLSTNIKPVV WTNTQSYRNP KVDELLNTAS STLDTAERKK
LYAAFQKTVT DELPVIFINN SPYHTAARKN VGNLPTTIWG PASPYDEIFL K
|
|---|
| |