Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5649 |
Symbol | |
ID | 5751269 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 6281411 |
End bp | 6283372 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641300781 |
Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
Protein accession | YP_001566662 |
Protein GI | 160901080 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00169895 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAATCGA GAGCCTCCCT TGTGGCCTTG CGCCAGGCCC GTCACAGCCT GATGGAGTCG GGCCTGTGCC CCAGCGGCCT GGTGGACGAG CGCCTGGCGC GCTCGTGGCA GCGCTGCATC GAGCAGGGAC TGCGTCCCAC AGGACGGCTG GGCGCCGCCG ACAACCTGGA GCAGCATGCG CTGGGCGTGC TGCGCAGCCG CCACCATGCG CTGCTGGCGC ATTCACGGCC CGTCATGGAA TACCTGTCCG AGCAGGTGCG CGGCAGCCAC AGCGTGGTGG TGCTGGCCGG CCCCTGCGGC ACCCTGGTGG ATACCTGCGG CGACCCCTTC TTTCTGGGCA AGGCCGAGCG CGTGGCCCTG GCCAGCGGCG CGTCCTGGCA TGAGGCGCAG CGCGGCACCA ATGCCATCGG CACGGCACTG GCCGAGATGG ACTCCATCGA AATCCAGGGC GGCGAGCATT TCCTGGAGCG CAACGGCTTT CTCACCTGCG CGGCCGCTCC CATCCTGTCG GGCACCGGCC AGCTGCTGGG CATCCTGGAC ATCTCCAGCG AACATGGCCG GGGCAGCCCG CACACGCTGG GCCTGGTCGG CACGGCGGCC CGCATGATCG AAAACCGCCT CATGGCCTGC GACGGCCAGC GCCACATCCG CCTGCACCTG CACGCGCGGC CCGAAGGCAT TGGCACGGTG GCCGAAGGCA TTGCGCTGAT CTCCGCGGAC GGATGGCTGG TGGGCGCCAA CCGCGCCGCG CTGGCCCTGC TGCGCCTGTC GCGGGGGCAA CTGGGCAGCG TGTCGCTGGA GCAGGTGCTG GACGCCGGCC TGGAGGAGCT GCTGTCACGC CAGCACCGCC AGCCCGATGC GGCCCAGCCG CTGCGGCGCC ATGACGGCAC GGCGCTGTTC GGCCAGCTGG TGCCGGACCG GCGCACGGTC CGGTCCTCGG TCGTGGAACG GGTTGCAGAG CAACAGCAAC AGGAACAGGC GCCGCAGCAG CCGGCGCGCG ATGCGCTGGC GCGGCTGGAC ACGGGCGATG CGCGCTGGCG CACGGCGGCC GACAAGGCCC GGCGTGTGCT GGGCAAGCCG ATTGCGCTGC TCATCCAGGG CGAGTCCGGC GTGGGCAAGG AATGGTTTGC GCGCGCGGCC CACGACAGCG GGCCGCGCCG CGACGGCCCC TTCGTGGCCA TCAACTGCGC GGCCATGCCC GAGTCGCTGA TCGAGGCCGA GCTGTTCGGC TACCGCCAGG GCGCCTTCAC GGGCGGGCGG CGCGAAGGAC AGGCGGGCCT GCTGCGCCAG GCGCACGGCG GCACGCTGTT CCTGGACGAG ATCGGCGACA TGCCGCTGCC GCTGCAGACC CGGCTGCTGC GCGTGCTGCA GGAGCGGCAG GTGGTGCCGC TGGGCGGTGG CACGCCCGTT GCGGTCGATT TCGCGCTGGT CAGCGCCTCC AACCGCAGGC TGCGCGAGGA TGCCGACCAG GGGCGCTTTC GTGCCGACCT GTACTACCGC ATCAACGGCC TGGCCGTGGA GCTGCCTCCG CTGCGCGAGC GCGGCGACTT CGAGGCGCTG GCAGCGCGCA TGCTGGCCGA CATCGAACCC GCGCGCCCGC TGCGCATGGC GCCGGCCCTG CTGGCGCAGC TGGCCGGCCA TGGCTGGCCC GGCAATCTGC GCCAGTGCGC CAGCGTGCTG AGAACGGCCT GCGCCATGCT CGATCCCCAC GAGGACTGCC TGCAGTGGCA GCACCTGCCC GACGACTTCC AGGCCGAGCT GGTGCAGACC GCCCGCAGCG GCCCCCGGCT GGACGCTGCG CCGCAGAGCC TGGATGAACT CTCGCGCTCG GCCGTGCGGC AGGCGCTGGA GAACTGCCGG GGCAATGTCA CCCAGGCCGC GCGCATGCTG GGCATCAGCC GCCAGACGCT GTACCGCAAG CTGGCCCAGG ACCGTGCGGC GGACGGCTTG CGGCTGCAGT GA
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Protein sequence | MQSRASLVAL RQARHSLMES GLCPSGLVDE RLARSWQRCI EQGLRPTGRL GAADNLEQHA LGVLRSRHHA LLAHSRPVME YLSEQVRGSH SVVVLAGPCG TLVDTCGDPF FLGKAERVAL ASGASWHEAQ RGTNAIGTAL AEMDSIEIQG GEHFLERNGF LTCAAAPILS GTGQLLGILD ISSEHGRGSP HTLGLVGTAA RMIENRLMAC DGQRHIRLHL HARPEGIGTV AEGIALISAD GWLVGANRAA LALLRLSRGQ LGSVSLEQVL DAGLEELLSR QHRQPDAAQP LRRHDGTALF GQLVPDRRTV RSSVVERVAE QQQQEQAPQQ PARDALARLD TGDARWRTAA DKARRVLGKP IALLIQGESG VGKEWFARAA HDSGPRRDGP FVAINCAAMP ESLIEAELFG YRQGAFTGGR REGQAGLLRQ AHGGTLFLDE IGDMPLPLQT RLLRVLQERQ VVPLGGGTPV AVDFALVSAS NRRLREDADQ GRFRADLYYR INGLAVELPP LRERGDFEAL AARMLADIEP ARPLRMAPAL LAQLAGHGWP GNLRQCASVL RTACAMLDPH EDCLQWQHLP DDFQAELVQT ARSGPRLDAA PQSLDELSRS AVRQALENCR GNVTQAARML GISRQTLYRK LAQDRAADGL RLQ
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