Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_5644 |
Symbol | |
ID | 5751264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | + |
Start bp | 6275872 |
End bp | 6276891 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641300777 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001566658 |
Protein GI | 160901076 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.331472 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.00217249 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAATTCGA TCGACCGCCG ACGTGCCATC GTGACTGGCG CCGCACTGAT CAGCGCACCG GCATTGGTGC TGCCGCGCTT CGCGCGCGCC GCCGAATTTA CCTACAAGTT CGGGACCAAC CTGCCGGCGA CACATCCCCT CAACGTGCGA GCGATGCAGG CCGCTGAGCG CATCCTGAAA GACACGGGTG GCCAGGTTCA GATCAACGTC TTCCCGAACA ACCAACTTGG CAACGACGCC GACATGCTCT CGCAGCTGCG CGCAGGCGGG CTCGAGTTCT TCACCGTCTC GGGCGTGAAC GTGCTGTCGC AGCTCGTGCC CGTCTCATCG ATGTGGGGGC TTGGATTCGC CTGGGCGAAC GACGAGGCCG TCAACAAGGC GCTGGACGGT GATCTCGGCA AATTTCTGCG CGCGCAGTTC CCCAAGGTCG GCCTGATGGC GATGGACACC GTGTGGAGTT CCGGCTTCCG GCAGATCACC AACAGCGTCC GTCCGATCAA CACGCCCGAC GACCTCAAGG GCTTGAAGAT TCGCGTGCCG GTTAGCCCTC TGTGGACCTC GCTGTTCAAG CATCTCGGCG CCGCACCCAC TTCTATCAAC TTCGCGGAGA CATATTCGTC TCTGCAGACG AAGGTGGTCG ATGGTCAGGA AAACCCTTTG GCGATCATCT CGATCGCCAA ACTCTACGAG GTGCAAAAGT ACTGTTCCAT GACCAACCAC ATGTGGGATG GCTATTGGTG CATGACGAAC CAAAAGGTCT GGAGCCGCAT GCCCGAGAAG GTAAGGCCCA TCATTGCCAA GCACCTGAAC CAGGCTGCGC TCGACATGCG CGCCGATGGC GCGAAGCTCG ACGCCTCGTT GCGGCCCGAG CTGACTTCCA GGGGGCTGGC CTTCAACGAC CCGGAAATCG GGCCGTTCCG TGCGCGGCTT CTTGCGTCGG GCTTCTACGC CGAGTGGAAG AAGAAGTATG GCGATGAGGC CTGGGCCTTG CTCGAGAAGC ACACCGGCAA GCTGGGCTGA
|
Protein sequence | MNSIDRRRAI VTGAALISAP ALVLPRFARA AEFTYKFGTN LPATHPLNVR AMQAAERILK DTGGQVQINV FPNNQLGNDA DMLSQLRAGG LEFFTVSGVN VLSQLVPVSS MWGLGFAWAN DEAVNKALDG DLGKFLRAQF PKVGLMAMDT VWSSGFRQIT NSVRPINTPD DLKGLKIRVP VSPLWTSLFK HLGAAPTSIN FAETYSSLQT KVVDGQENPL AIISIAKLYE VQKYCSMTNH MWDGYWCMTN QKVWSRMPEK VRPIIAKHLN QAALDMRADG AKLDASLRPE LTSRGLAFND PEIGPFRARL LASGFYAEWK KKYGDEAWAL LEKHTGKLG
|
| |