Gene Daci_5504 details

Gene Information

• Locus tag: Daci_5504
• Symbol: mscL
• ID: 5751124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Delftia acidovorans SPH-1
• Kingdom: Bacteria
• Replicon accession: NC_010002
• Strand: +
• Start bp: 6108809
• End bp: 6109237
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 641300637
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_001566518
• Protein GI: 160900936
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 0.215904
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGCATGA TGCAGGAATT TCGTGAGTTC GCAGTTAAGG GAAACGTGGT AGATCTCGCC 
GTGGGCGTCA TCATCGGCGG AGCGTTTGGC AAAATCGTCG ATTCCGTGGT AAACGACCTG 
ATCATGCCGG TCGTTGGCCT TGTTTTCGGC AAGCTGGACT TCTCCAATCT GTTCGTCGTG 
CTGGGCAGCG TGCCCCCCGG AACAGCGATG ACGCTCGATG CCCTCAAGAA GGCCGGCGTC 
CCCGTATTTG CCTATGGGAA CTTCATCACG GTGGCGGTGA ATTTCATCAT CCTGGCCTTC 
ATCATTTTCA TGATGGTCAA GCAGATCAAC CGCCTTCGCC GCGAGGCCCC GGCCGCCCCC 
GCGCCGGCCC CCGTCACACC TGAAGACATC GTGCTGCTGC GCGAGATTCG CGACAGCCTC 
AAGCGCTGA 

 

Protein sequence

MGMMQEFREF AVKGNVVDLA VGVIIGGAFG KIVDSVVNDL IMPVVGLVFG KLDFSNLFVV 
LGSVPPGTAM TLDALKKAGV PVFAYGNFIT VAVNFIILAF IIFMMVKQIN RLRREAPAAP 
APAPVTPEDI VLLREIRDSL KR