| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5406 |
|---|
| Symbol | |
|---|
| ID | 5751021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 6000062 |
|---|
| End bp | 6001780 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641300534 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_001566420 |
|---|
| Protein GI | 160900838 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TCCCCCGCGA GATCCCTGCA CAGCAGGCCT CGGCACTGCG CCAGGCCGGC
GTCCACCCTC TGCTGGCCCA GCTCTACGCC GCACGCGGCG TGTGCTCCGC CGACGAACTG
GACGACACGC CTGCACGCCT GCTGCCACCC TCGGGCCTGC TGGGCATGGA GGCCGCCGTG
CGGCTGCTGG CCGATGCCAT AGAGCGCGGC CTGCGCCTGT GCATCGTGGC CGACTACGAC
TGCGACGGCG CCACCGCCTG CGCCGTGGGC TGGCGCGGCC TGCGCATGCT GGGCGCGACC
GAGGTCAGCT ACCTGGTGCC CGACCGCGTG GTGGACGGCT ACGGCCTGAC GCCGCCCATC
GCACGCCGCG TCAAGGAAAC CGGCGCCGAG GTGATGGTCA CCGTGGACAA CGGCATTGCC
AGCGTCGAAG GCGTGGCCGA GGCCAAGGCC CTGGGCCTTC AGGTGGTGGT CACCGACCAC
CACCTGCCCG GCAACCACCT GCCGCTGGCC GATGCCATCG TCAACCCCAA CCAGCCCGGC
TGCAGCTTCG AGAGCAAGTC CATGGCCGGT GTCGGCGTGA TGTTCTACGT GCTGCTGGCC
CTGCGTGCCG AGTTGCGCGC GCGCGGCCGC TTCGACAAGG CCAGCCAGCC CCGGCTGGAG
GCCCTGCTGC CCCTGGTCGC CCTGGGCACG GTGGCCGACG TGGTCCGGCT GGACGCCAAC
AACCGCCGCC TGGTCGCCCT GGGCCTGAAG CAGATCCGCC GTGGCCAGAT GCAGCCGGGC
CTGCTGGCCC TGTTCGAAGC CGCTGGCCGC AAGGCCTTTG CGGCCACCAC GTTCGACTTC
GGCTTTGCCC TGGGCCCGCG CATCAATGCC GCAGGCCGGC TGTCCGACAT GACCATCGGC
ATCGAGTGCC TGACCACGGA CGATGCGGGC CGCGCCGCCA ACCTGGCGCA GATGCTGGAC
GCCATCAACC GCGAACGCCG CGAACTGGAA GGCGGCATGC GCGAGCAGGC CCTGCTCATG
GCCGAAGGCC TGTGCGAGGA CGGCATGACG CCGCCGGCGG CCATCAGCGT GTTCGACCCC
GACTTCCACG AGGGCGTGGT CGGCATCGTG GCCTCGCGCA TCAAGGACCG CATGCACCGG
CCCAGCTTCG TCTTCGCCGC CAGCGGCGCG CCGGGGCACG AGCATGAACT CAAAGGCTCG
GGCCGCTCCA TTCCCGGCTT TCACCTGCGC GACGCGCTGG ACCTCGTATC CAAGCGCCAC
CCCGGCCTGC TGCTGCGCTT TGGCGGCCAC GCCATGGCGG CCGGCTGCAC CATTGCCGAG
GCCGGTTTCG CGGTGTTCGA AAAGGCCCTG GCCCAGGTGG CACAGGAATG GCTGGACGCG
GCCACGCTGA CGCGCCGCAT AGAGACCGAC GGACCGCTGG ACCCGGATTT CCGCAAGCCC
GAAATGGTCG AGCAGCTCAA TCTCGCGGTC TGGGGCCAGG GCTTTGCCCC GCCCACCTTC
AGCGAGCAAC TGGAAGTGCT CTCACAGCGC CTGGTCGGTG AAAAGCACCT GAAACTGCAA
TTGCGCCATC AGGGCGAAAC CGTGGACGGA ATCTGGTTCG GCCATACCGA CCCGCTGCCG
CCATCGGCCT GCATTGCCTT TCGCATGGAC ATCAATGAAT GGCGCGGAGA GCGCAAGGTG
CAATTCCTGA TCGAGGGAGT GCATTCGGAC GCGTCCTAG
|
|---|
| Protein sequence | MKIIPREIPA QQASALRQAG VHPLLAQLYA ARGVCSADEL DDTPARLLPP SGLLGMEAAV
RLLADAIERG LRLCIVADYD CDGATACAVG WRGLRMLGAT EVSYLVPDRV VDGYGLTPPI
ARRVKETGAE VMVTVDNGIA SVEGVAEAKA LGLQVVVTDH HLPGNHLPLA DAIVNPNQPG
CSFESKSMAG VGVMFYVLLA LRAELRARGR FDKASQPRLE ALLPLVALGT VADVVRLDAN
NRRLVALGLK QIRRGQMQPG LLALFEAAGR KAFAATTFDF GFALGPRINA AGRLSDMTIG
IECLTTDDAG RAANLAQMLD AINRERRELE GGMREQALLM AEGLCEDGMT PPAAISVFDP
DFHEGVVGIV ASRIKDRMHR PSFVFAASGA PGHEHELKGS GRSIPGFHLR DALDLVSKRH
PGLLLRFGGH AMAAGCTIAE AGFAVFEKAL AQVAQEWLDA ATLTRRIETD GPLDPDFRKP
EMVEQLNLAV WGQGFAPPTF SEQLEVLSQR LVGEKHLKLQ LRHQGETVDG IWFGHTDPLP
PSACIAFRMD INEWRGERKV QFLIEGVHSD AS
|
|---|
| |