| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5390 |
|---|
| Symbol | |
|---|
| ID | 5751005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5980461 |
|---|
| End bp | 5983211 |
|---|
| Gene Length | 2751 bp |
|---|
| Protein Length | 916 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641300518 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001566404 |
|---|
| Protein GI | 160900822 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.787715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.345998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGCC AGCCCCATCA GACGGACTGG GCGGCGGCCG ACCCCGTCCG CGCGCCCGGC
CCGGCAGCGG CCGCAAGCCC TGCGGGCATG CGCCATACCC TGGCGCTGAT GCTGGTGCTG
CTGACGGTGG CCCTGGCGGC CGCCATGGTC TGGCTGCTCA GCGGCATGCG GACCACGGCG
CAGGAAGAGG CTTCGCTGCG CCTGGTGCGC TTTGTGCTGG GCACCGAGGC GGCCATCAGC
CGCAGCCTGG AATCCCTGGA TGCCCTGGCG CTGGGCGTGG ACGAACTGCT GGGTTCGCGC
AACCCCGCAT CGGCATCGCA GCCGCAACTG CAGGAAATGC TGCACACCAT GGTGCGGCAG
AACACGCTGG CGCAGCGCGC CTCGGTGCAC GATATCCAGG GCCGGGAACT GGCCGCTTCG
GGCGATGGCC CGGTCATCGA CCTGCCTGCG CAGGCCTGGG AGCGCCTGGC GGGCCAAAGC
CGCTCCCAAT TGCTGGCAAG TCCACCCTCC GTCGCGCCGC AGGTGCCGGG TGGCGAGCGC
ATGCTGTACC TTGTGCGGCC CCTGAGCCGG GCGGAGCAGG GCGGCTATGT GCTGATGCAG
GTGCCGGCTG CGGCGCTGGG CGCCGTGCTG GCCCAGGGCG GTGTGCTGGA CGGCCTGGAG
GTCACGCTGG AGCAGGGCAG CGGCGAGCTG CTGCTGTCCA TGCCCCAGTA TGGCGATGTC
GCCGCTGTGC GGCTGCTGCC GACGACGTCG CAGCTGCCGT CCAGCGGCGT CATGCACATG
GCTGCACGCC TGAGCCGCGT GCCTGCCCTG GTGGCTGCGC ATCCGCTGCC CAAGGGCCAT
CTGTGGGTCA CGGCCAGCCT GCCCATGTCC TCCGTGCTGG CCAGCTGGCG CGTTGCTGCC
TGGCTGATGG TGCTGGCCGT GATGATCTTC GGCGTGCTGC TGGCCGTGCT GGGCTGGACC
GTGCACCGCT ACATGGACCG CCTGCATGCC GCGCGGCGCC AGGCCCAGCG GTCCGAGCAG
TGGCTGGACC AGGCGCTGGA CAGCATGGTC AGCGGCTTTC TGCTGCTGGA TTCGCAGCAG
CGCGTGCTGC GCTGGAACCG CTGCTACGAG GAAATGTTCC CCTGGCACGC GGACCAGCTG
GAGCCTGGGC GGCCCCTGCA ATCGCTGCTC GATTCCTGCC CCAGCGCCGT GGGTCTGGCG
GCGGCGCCGG CGCAGGCCTA TGAGGCCAAG GACCTGCACC GCCAACTGGT GCTGCGCCCT
GGCGTGCCCT TTGAGCAGCA ACTGCCCAGC GGCCGCTTTG TCCAGATGAC GGCACGGCTG
GCCGCCGAGG ACGGCGTGGT CATCACCTAC AACGATGTCA CCGATATCCG GCTGGCCACG
GCCGAGATCG AGAGCCTGGC CTTCTACGAT CCGCTGACCA GCCTGCCCAA TCGCCGCCTG
CTGCTGGACC GCCTGGCCCA GGCCACGGTG CTGGCCGCAC GCGAAGGCTG GACCGGGGCG
CTGCTGTTCC TGGACCTGGA CCAGTTCAAG ATGCTCAACG ACACGCTGGG CCACGAAGTG
GGCGACCAGC TGCTGCAGCA GGTGGCGCAC CGCCTGCGCA GCGCCGTGCG ATCTTCGGAC
ACGGTGGCGC GCCTTGGGGG GGATGAGTTC GTGGTCATGC TCTGCGAGCT GTCGCACGAG
CCTGCCGAGG CGGCCACGCT GGCCCAGCGC ATCGGCGAGA AGATCCTGGC GCGGCTCAAC
CAGTCCTATG TGCTGGGCGC CCACCTGCAC CGCAGCGCCT GCAGCATTGG CGCCACGCTG
TTCGGCCGCC AGCCGCAGTC GGCGGCCGAG CTGCTCAAGC AGGCCGACAT CGCCATGTAC
CAGATCAAGG CGCGCAACGG CAGCGGTCTG TGCTTCTTCG ATCCGCAGAT GCAGGTGGAA
ATCCACCAGC GCGTGCGCAT GGAAGGCGAC CTGCGCCAGG CCCTGGCGCA GTCCCAGTTC
GAGTTGCACT ACCAGCCCCA GTTCACGCTG GCCGGCGAGG TCATAGGCGC CGAAGCCCTG
CTGCGCTGGC GCCACCCCGA ACGCGGCCTG GTGCCGCCCG GCATGTTCAT TGCCGTGGCC
GAGGAAAGCG AGATCATCGT GCCGCTGGGC ATGTGGGTGA TCCGCACGGC CTGCGAGCAA
CTGGCGATCT GGCAAAAGGA TGCGCGGCTG CGCCATCTGC AGGTGGCCGT GAATGTCAGT
GCCCGCCAGT TCCGGCACCA GAACTTCGCC TCCCAGGTCA TCGAGCAGGT GCGCAATGCC
GGCATTGCGC CCCATCTGCT CAAGCTGGAG CTGACCGAGT CGCTTGTGAT CGAGAACGTG
CAGGAGTCCA TCGACAAGAT GAAGCAGCTG CGCAGCCATG GCGTGTGCTT TTCCATGGAC
GACTTCGGCA CCGGCCACTC CTCGCTGACC TATCTCACCC AGCTGCCGCT GAACCAGCTC
AAGATCGACC AGTCCTTCGT GCGCCACCTG GGCTTGCGCC ATACCGATGA CGTGATCGTG
CAGACCATCA TCGGCATGGC GCGCAACCTG AACCTGGATG TGATCGCCGA AGGCGTGGAG
ACCCTGGAGC AGCGCGCCCT GCTCGCACAC TACGGCTGCG AGTATTTCCA GGGCTACCTG
TTCAGCCCGC CCGTGCCCAT ACGCGCGTTC GAGCAGCTGC TGGCCAAGGT GCCCGTGCGC
ACCGTGGCGC ATGGCCTGCC CAAGGCTATG CCCGGCGCGA AGACACCATG A
|
|---|
| Protein sequence | MTGQPHQTDW AAADPVRAPG PAAAASPAGM RHTLALMLVL LTVALAAAMV WLLSGMRTTA
QEEASLRLVR FVLGTEAAIS RSLESLDALA LGVDELLGSR NPASASQPQL QEMLHTMVRQ
NTLAQRASVH DIQGRELAAS GDGPVIDLPA QAWERLAGQS RSQLLASPPS VAPQVPGGER
MLYLVRPLSR AEQGGYVLMQ VPAAALGAVL AQGGVLDGLE VTLEQGSGEL LLSMPQYGDV
AAVRLLPTTS QLPSSGVMHM AARLSRVPAL VAAHPLPKGH LWVTASLPMS SVLASWRVAA
WLMVLAVMIF GVLLAVLGWT VHRYMDRLHA ARRQAQRSEQ WLDQALDSMV SGFLLLDSQQ
RVLRWNRCYE EMFPWHADQL EPGRPLQSLL DSCPSAVGLA AAPAQAYEAK DLHRQLVLRP
GVPFEQQLPS GRFVQMTARL AAEDGVVITY NDVTDIRLAT AEIESLAFYD PLTSLPNRRL
LLDRLAQATV LAAREGWTGA LLFLDLDQFK MLNDTLGHEV GDQLLQQVAH RLRSAVRSSD
TVARLGGDEF VVMLCELSHE PAEAATLAQR IGEKILARLN QSYVLGAHLH RSACSIGATL
FGRQPQSAAE LLKQADIAMY QIKARNGSGL CFFDPQMQVE IHQRVRMEGD LRQALAQSQF
ELHYQPQFTL AGEVIGAEAL LRWRHPERGL VPPGMFIAVA EESEIIVPLG MWVIRTACEQ
LAIWQKDARL RHLQVAVNVS ARQFRHQNFA SQVIEQVRNA GIAPHLLKLE LTESLVIENV
QESIDKMKQL RSHGVCFSMD DFGTGHSSLT YLTQLPLNQL KIDQSFVRHL GLRHTDDVIV
QTIIGMARNL NLDVIAEGVE TLEQRALLAH YGCEYFQGYL FSPPVPIRAF EQLLAKVPVR
TVAHGLPKAM PGAKTP
|
|---|
| |