| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5325 |
|---|
| Symbol | |
|---|
| ID | 5750937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 5905427 |
|---|
| End bp | 5908270 |
|---|
| Gene Length | 2844 bp |
|---|
| Protein Length | 947 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641300450 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001566339 |
|---|
| Protein GI | 160900757 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATT CCAAGACCCT GGTGCTGATC GACGGCTCCA GCTACCTCTA CCGCGCCTAC
CACGCCATGC CGGACCTGCG CGCCGAGCCC GGCAACCCGG AAAGCCCTGC CACGGGCGCC
ATCCGCGGCA TGATCAACAT GCTCCAGGCG ATCAGGAAGG AAGTGGCGGC CGACTACGCC
GTCTGCGTGT TCGACACCAG CGGACCCACC TTCCGCGACA CGCTCTACCC CGAATACAAG
GCGCACCGCT CGCCCATGCC CGACGATCTG CGCTCGCAGA TCGAGCCCAT CCATGAAGTG
GTCCGCCTGC TGGGCTGGCC GGTGCTGGCC ATCCAGGGCG TGGAGGCCGA CGACGTGATC
GGCACCCTGG CCAAGACGGC CGCCGCCCAG GGCGTGAACG TGGTGATCTC CAGTGGCGAC
AAGGACCTGT CCCAGCTGGT GGACTCCCAC ATCATGGTGA TGGACACCAT GAGCGGCAAG
CGCCGCGACG TGGCCGGCGT GACGGCCGAG TTCGGCGTGC CGCCCACGCA GATGATCGAC
TACCAGGCCC TGGTCGGCGA TGCCGTGGAC AACGTGCCCG GCGTGTCCAA GGTGGGCCCC
AAGACGGCCG TCAAGTGGCT GGCAGAGCAC GGCTCGCTCG ACGGCCTGAT TGCTGCGGCC
GACGGCATCA AGGGCGTGGC CGGCCAGAAC CTGCGCGATG CCATCGCCTC GGGCCAGCTG
GCGCTGAGCC GCCAGCTGGT CACCATGAAG ACCGACTGCG ACCTGAGCGC CGAAGTGCCC
ACCCTGCCGG TGCTCGACGC GCTGGCGCCG CGCGAGCCCG ATACCGCGCC GCTGCGCGAC
TTCTATGAGC GCTACGGCTT CAAGGGCCTG GCGCGCATGC TCGGCGGTGC CGCGCCCGAG
CCCGATGCGC TGGAAGCCGT CAAGGCCGGC CGCAAGCCAG CGGCCAAGCC GCGTGCCGAC
CAGTCCACGG GCGACATGTT TGCCCAGGAG CAGGCCGAAT CCGACGACGC CACCACCGAG
GCCGAGGCCG TCCAGCAGCG CCCGCTGGAC TATGACGTGG TGCTGACCTG GGAAGCGTTC
GACCAGTGGC TGGCCAAGAT CAACGCCGCC GAACTCACGG CCCTGGATAC CGAAACCACC
TCGCTGGACG AGATGCGTGC CGAGATCGTG GGCATCTCGC TGAGCGTGGA GCCCGGCGCC
GCTGCCTACA TCCCCCTGCG CCATGCCGGC CCCGACGCGC CCGAGCAACT GCCGGCCGAC
GAGGTGCTGC AGCGCCTCAA GCCCTGGCTG GAGGATGCGG CCCGGCCCAA GCTGGGCCAG
CACGTCAAGT ACGACCGCCA TGTCTTCGCC AATGCCGGCA TCGAGGTGCA CGGCTATGTG
CACGACACCA TGCTGCAAAG CTATGTGCTG GAAGTGCACC GCCCGCACGG CCTGGCCAGC
CTGGCGCTGC GCCACACCAA CCGCACGGGC ATCAGCTATG AAGACCTGTG CGGCAAGGGC
GCCCACCAGA TCCCGTTCGC CCAGGTGCCC GTGGACAAGG CTGCCGCCTA TGCCTGCGAG
GATGCCGACC AGACCCTGGA CGTGCACCGC GTGCTGTGGC CGCAGCTGCA GGCCAACGAC
GGCCTGCGCG GCGTCTACGA GCTGGAGATC GCCACCAGCG AGGCCCTGTT CCGCATAGAG
CGCAACGGCG TGCTCATCGA TGCCGCCACG CTGGCCAGGC AGAGCAACGA CCTGGGCCAG
CGCATCGTGC AGCTGGAGCA GGAGGCCTAC GACATCGCGG GCCAGCCCTT CAACCTGGCC
AGCCCCAAGC AGCTGGGCGA AATCTTTTTC GACAAGCTGG GCATGCCCGT GGTCAAGAAG
ACGGCCACCG GCGCACGCAG CACCGACGAA GAGGTGCTGG AGAAGCTGGC CGAGGACTAT
CCGCTGCCCG CCAAGCTGCT GGAACACCGC AGCCTGTCCA AGCTCAAGGG CACCTATACC
GACAAGCTGG CCCAGCTGGC GCTGCCGCGC ACGGGCCGCG TGCACACGCA CTACGCCCAG
GCCGTGGCCG TGACGGGGCG CCTGTCCAGC AACGACCCCA ACCTGCAGAA CATCCCCATC
CGCACGCCCG AAGGCCGGCG CGTGCGCGAG GCCTTCATTG CCGCGCCCGG CCATGTGATC
GCCAGCGCCG ACTACTCGCA GATCGAGCTG CGCATCATGG CCCACCTGTC GGGCGACGAG
TCCCTGCTGC GCGCCTTCCA CGAAGGCCGC GACGTGCACC GTGCCACGGC ATCGGAAGTC
TTCAACGTGG AGCTGGAGCA GGTCAGCAGC GAGCAGCGCC GCTACGCCAA GGTCATCAAC
TTCGGGCTGA TCTACGGCAT GAGCAGCTTT GGCCTGGCCA AGAACCTGGG CATAGAGACC
AAGGCCGCGG CCGCCTACAT CGACCGCTAT TTCCAGCGCT ATCCGGGCGT CAAGCGCTAC
ATGGACGAGA CGGTGGAATT CGCGCGCGAC CACGGCTACG TGGAAACCGT CTTCGGCCGC
CGCCTGTACC TGGTGGACAT CAACGGCGGC AGCGGCCCGC GCAAGAAGGC GGCCGAACGC
CAGGCCATCA ACGCGCCCAT GCAGGGCACG GCGGCCGATC TGATCAAGAA GGCCATGGTG
GCAGTGCAGG CCGAGCTCGA TGCCAGGCAG TCCGAGGTCC GCGTCATCAT GCAGGTGCAC
GACGAACTGG TGTTCGAGCT GCCCGAAGGC GAGTCGGACT GGGTGCGCAC CGAGATCCCG
CGCCTGATGG CCGGCGTGGC CGACTTGAAG GTGCCGCTGC TCGCCGAGGT GGGCCTGGGA
CCCAACTGGG ACAAGGCACA TTGA
|
|---|
| Protein sequence | MSNSKTLVLI DGSSYLYRAY HAMPDLRAEP GNPESPATGA IRGMINMLQA IRKEVAADYA
VCVFDTSGPT FRDTLYPEYK AHRSPMPDDL RSQIEPIHEV VRLLGWPVLA IQGVEADDVI
GTLAKTAAAQ GVNVVISSGD KDLSQLVDSH IMVMDTMSGK RRDVAGVTAE FGVPPTQMID
YQALVGDAVD NVPGVSKVGP KTAVKWLAEH GSLDGLIAAA DGIKGVAGQN LRDAIASGQL
ALSRQLVTMK TDCDLSAEVP TLPVLDALAP REPDTAPLRD FYERYGFKGL ARMLGGAAPE
PDALEAVKAG RKPAAKPRAD QSTGDMFAQE QAESDDATTE AEAVQQRPLD YDVVLTWEAF
DQWLAKINAA ELTALDTETT SLDEMRAEIV GISLSVEPGA AAYIPLRHAG PDAPEQLPAD
EVLQRLKPWL EDAARPKLGQ HVKYDRHVFA NAGIEVHGYV HDTMLQSYVL EVHRPHGLAS
LALRHTNRTG ISYEDLCGKG AHQIPFAQVP VDKAAAYACE DADQTLDVHR VLWPQLQAND
GLRGVYELEI ATSEALFRIE RNGVLIDAAT LARQSNDLGQ RIVQLEQEAY DIAGQPFNLA
SPKQLGEIFF DKLGMPVVKK TATGARSTDE EVLEKLAEDY PLPAKLLEHR SLSKLKGTYT
DKLAQLALPR TGRVHTHYAQ AVAVTGRLSS NDPNLQNIPI RTPEGRRVRE AFIAAPGHVI
ASADYSQIEL RIMAHLSGDE SLLRAFHEGR DVHRATASEV FNVELEQVSS EQRRYAKVIN
FGLIYGMSSF GLAKNLGIET KAAAAYIDRY FQRYPGVKRY MDETVEFARD HGYVETVFGR
RLYLVDINGG SGPRKKAAER QAINAPMQGT AADLIKKAMV AVQAELDARQ SEVRVIMQVH
DELVFELPEG ESDWVRTEIP RLMAGVADLK VPLLAEVGLG PNWDKAH
|
|---|
| |