| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5238 |
|---|
| Symbol | |
|---|
| ID | 5750850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 5803539 |
|---|
| End bp | 5804609 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641300363 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_001566252 |
|---|
| Protein GI | 160900670 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.37874 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG CAGTCTTGCC CGGTGATGGC ATCGGCCCCG AAATCGTTGC GGAAGCCGTG
AAGGTGCTGG GCGCCCTGGG CCTGGACTTC GACATGCAGA CGGCCCCCGT GGGCGGCGCT
GCCTACGAAG CTGCCGGCCA CCCGTTGCCC GAATCCACGC TGAAGCTGGC CATGGAGTCC
GACGCCGTGC TGTTCGGCGC CGTGGGCGAC TGGAAGTACG ACACGCTGGA CCGCCCGCTG
CGCCCCGAGC AGGCCATCCT GGGCCTGCGC AAGCACATGG GCCTGTTCGC CAACTTCCGC
CCGGCCATCT GCTATGCGGA ACTGACCCAC GCCTCCAGCC TCAAGCCCGA GCTGGTCGCG
GGCCTGGACA TCCTCATCAT CCGCGAGCTG ACCGGCGACA TCTACTTCGG CCAGCCGCGC
GGCCGCCGCG TGGCCACCGA CGGCCACTTC CCCGGTGCCG AGGAAGCCTT CGACACCATG
CGCTACTCCA AGCCCGAGAT CGAGCGCATC GCCCATGTCG CCTTCCAGGC CGCGCAAAAG
CGCAGCAAGC GCGTGACCAG CGTGGACAAG GCCAACGTGC TGGAAACATT CCAGTTCTGG
AAGGACGTGG TCACCGAAGT GGGCCAGCAG TACCCCGATG TGCAACTGGA CCACATGTAC
GTGGACAACG CCGCCATGCA GCTGGTCAAG GAACCCAAGC GCTTTGACGT GGTGGTCACG
GGCAACATGT TCGGCGACAT CCTGTCCGAC GAAGCCTCCA TGCTGACCGG CTCCATCGGC
ATGCTGCCCT CGGCATCGCT CAACTCCAGG GGCCAGGGCC TGTACGAGCC CAGCCACGGC
TCGGCCCCCG ACATCGCCGG CAAGGGCATT GCCAATCCGC TGGCCACCAT CCTGTCGGCC
GCGATGATGC TGCGCTTCTC GCTGAACCAG GAAGCCGCCG CCCAGCGCAT CGAAGCCGCC
GTGCAAAAGG TGCTGGCCCA GGGCCTGCGC ACGGCCGACA TCTACAGCGA AGGCACGACC
AAGGTCTCCA CCCGCGAGAT GGGCGATGCC GTGGTGGCCG CACTGGCCTG A
|
|---|
| Protein sequence | MKIAVLPGDG IGPEIVAEAV KVLGALGLDF DMQTAPVGGA AYEAAGHPLP ESTLKLAMES
DAVLFGAVGD WKYDTLDRPL RPEQAILGLR KHMGLFANFR PAICYAELTH ASSLKPELVA
GLDILIIREL TGDIYFGQPR GRRVATDGHF PGAEEAFDTM RYSKPEIERI AHVAFQAAQK
RSKRVTSVDK ANVLETFQFW KDVVTEVGQQ YPDVQLDHMY VDNAAMQLVK EPKRFDVVVT
GNMFGDILSD EASMLTGSIG MLPSASLNSR GQGLYEPSHG SAPDIAGKGI ANPLATILSA
AMMLRFSLNQ EAAAQRIEAA VQKVLAQGLR TADIYSEGTT KVSTREMGDA VVAALA
|
|---|
| |