| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5084 |
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| Symbol | |
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| ID | 5750695 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5637135 |
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| End bp | 5638007 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641300208 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001566098 |
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| Protein GI | 160900516 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0436378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0244706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTGC TCCGCGCCGC CCTGAAGCAC CGCCCGCACC TGGCGCGCGG CGCCGGGGTG
CGCGCGCTGG CGGCGCTGGG CCTGGCCCTG GCGCTGTGGG GGCTGGCGCG GCCGGCGCAT
GCCGATCTCT GGGCCTTCGT GGACGAGCGC GGCATCACGC ACTTCGCTGC CGAGGCGCTG
GACGAGCGCT ACAGGCTGTA CTTTCGCGGC TCGGTCTATG ACAGCGCCGA GCAGGGGCTC
AAGCCCCCGA TGGTGCAGGC CGAGGCCGCT GCCGACGCTG ACGGCAGCGG CGATGCCGGC
CGCAGGCTGC AGGCGCATAC GCGGCTGCAA AGCTTCTTCG ACATCTCGCC GCGCTACAAG
AGCGTGCGCG GCCATCTGCG CAAGGCGGCG GACCACACGG GCGTGGACTA CGATCTGCTC
AAGGCCGTGA TCGCCGTCGA GTCGGGCTTT GACGCGCAGG CCATCTCGCC CAAGGGGGCG
GTCGGCCTGA TGCAGCTGAT GCCGGCCACG GCCCAGCGCT TCGGCGTGGA GGCCAGCCGC
CAGCGCAGCG TGCAGCAGCA ACTGGCCGAT CCGGCCGTCA ACGTGCCGGC TGGCGCGCGC
TACCTCAACC ATCTGATGGG GCTGTTCCCC GGCCGGCTGG ACCTGGTGCT GGCCGCCTAC
AACGCAGGCG AGGGCGCCGT GCGGCGCGCG GGCCAGGCCA TCCCTCCCTT CCAGGAAACC
CGCAATTACG TGAAGGCCGT GCTCGGCATC TACGAGCAGC TGCAGGGCGG GCGCGAGCGC
GCGGGCCCTG CAGCGCCTGC AGCAGCGGCG TTGCCGGGCA CCACGCCCCG GGTGCGCATG
ACGCTGCCCA CAGGACTGCC CACGCCGCAA TGA
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| Protein sequence | MTVLRAALKH RPHLARGAGV RALAALGLAL ALWGLARPAH ADLWAFVDER GITHFAAEAL
DERYRLYFRG SVYDSAEQGL KPPMVQAEAA ADADGSGDAG RRLQAHTRLQ SFFDISPRYK
SVRGHLRKAA DHTGVDYDLL KAVIAVESGF DAQAISPKGA VGLMQLMPAT AQRFGVEASR
QRSVQQQLAD PAVNVPAGAR YLNHLMGLFP GRLDLVLAAY NAGEGAVRRA GQAIPPFQET
RNYVKAVLGI YEQLQGGRER AGPAAPAAAA LPGTTPRVRM TLPTGLPTPQ
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