Gene Daci_5049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5049 
Symbol 
ID5750660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5593728 
End bp5595038 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content71% 
IMG OID641300173 
Product4-aminobutyrate aminotransferase 
Protein accessionYP_001566063 
Protein GI160900481 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0160] 4-aminobutyrate aminotransferase and related aminotransferases 
TIGRFAM ID[TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.96187 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.62875 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGCG CCACCGCCTC TTCCCCGAAC CAGCAACTCC AGAACCGGCG CAACGCCGCC 
ATGCCGCGCG GCGTGGGCGT GATGTGCGGC TTCCATGCCG TGCAGGCCGA CAATGCCCTG
CTGACCGATG CCGAGGGCCG GCAGTACATC GATTTCGCGG CCGGCATTGC CGTGCTCAAC
ACGGGCCACC GCCATCCGCG CGTGGTCCAG GCCGTGCAGC AGCAACTGGA GCGCTTCACG
CACACGGCCT TCCAGATCGT TCCCTACGAA AGCGCGATTG CGCTGGCCGA GCGCATCAAT
GCGCTGGCGC CCATCGCCGG CCCGGCCAAG ACCGCCTTCT TCACCACGGG CGCCGAGGCC
GTGGAGAACG CCGTCAAGAT CGCGCGCCAT GCCACGGGCC GCTCGGCCGT GATCGCCTTC
CAGGGCGCCT TCCATGGCCG CACCCAGCTG GGCATGGCAC TGACGGGCAA GGTGGCGCCC
TACAAGCAGG GCTTCGGCCC CATGCTGGGC GAAGTCTTCC ACGCGCCCTT CCCCGGCGAG
CAGGCGGGCG TGAGCGTGCA GCAGTCGCTG GACGCCATTG CCATGCTGCT CAAGACCTCG
GTGGACCCGC AGCGCGTGGC CGCCATCATC GTGGAGCCCG TCCAGGGCGA AGGGGGCTTT
CACCCCGTGC CTGCCGCCCT GTTCACCGGC CTGCGCCAGC TGTGCGACCA GCACGGCATG
CTGCTGATCG CCGACGAGGT GCAGACCGGC TTCGCTCGCA CGGGCAAGCT GTTCGCCATG
GAGCACTACG GCGTGCAGCC CGACCTGATC ACCATGGCCA AGAGCCTGGG CGGCGGCCTG
CCGATCTCGG GCGTGGTGGG CCGCGCGGCC GTCATGGACG CACCCCACCC CGGCGGCCTG
GGCGGCACCT ATGCCGCCAA CCCGCTGGCC GTGGCCGCGG CCCATGCCGT GCTCGACGTG
ATCGATGAAG AACGGCTGTG CGAGCGCGCC CACGCGCTGG GCAACCAGCT GCGCGCGCGC
CTGCAAGCCC TGCAGGCGCA GGATGCCGGC ATTGCCGACG TGCGCGGCCT GGGCTCGATG
CTGGCCGTGG AGTTCCGCCT TCCCGGCAGC GGCGAGCCCG ACGCGCAGCG CGTGGCCGCC
GTCGTCCGGC ACGCGCAGGA GCAGGGCCTG CTGCTGCTGA CCTGCGGCCT GTACGGCAAC
GCCATCCGCT TTCTCTATCC GCTGACGATT CCACAGCCGC TGTTCGCCAG GGCCCTGGAC
ATCATCGACA GCGCCATCAC CCAGAGCGCG TCCCAGCCAG TCGCCGCCTG A
 
Protein sequence
MSSATASSPN QQLQNRRNAA MPRGVGVMCG FHAVQADNAL LTDAEGRQYI DFAAGIAVLN 
TGHRHPRVVQ AVQQQLERFT HTAFQIVPYE SAIALAERIN ALAPIAGPAK TAFFTTGAEA
VENAVKIARH ATGRSAVIAF QGAFHGRTQL GMALTGKVAP YKQGFGPMLG EVFHAPFPGE
QAGVSVQQSL DAIAMLLKTS VDPQRVAAII VEPVQGEGGF HPVPAALFTG LRQLCDQHGM
LLIADEVQTG FARTGKLFAM EHYGVQPDLI TMAKSLGGGL PISGVVGRAA VMDAPHPGGL
GGTYAANPLA VAAAHAVLDV IDEERLCERA HALGNQLRAR LQALQAQDAG IADVRGLGSM
LAVEFRLPGS GEPDAQRVAA VVRHAQEQGL LLLTCGLYGN AIRFLYPLTI PQPLFARALD
IIDSAITQSA SQPVAA