| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5045 |
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| Symbol | |
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| ID | 5750656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5588390 |
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| End bp | 5590816 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641300169 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001566059 |
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| Protein GI | 160900477 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.420321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.303158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTT CAAAGTCCGT GAAGTCCAAG CAGGCCCCCG AAGCTCCAGC GAAGCCCAAG
ACTTCGACAA CCTCTTCAGC CCCGGCCAAG GCCGCTGCAG GACCGAAGAG CGCCGCATCT
GCGGCCAAAG CAAAGAAAGA TACCGACGTG GTAACCAAGT CCCAAGCCGA ACTCAAAGCC
ATGGCCGACG AGCTGCTCGC CGCCGCGACC CCCAAGCGCG GCCGCAAGAA GGCAGCCGAA
GGCGACGACG CCCCCGCCCA GACCGAAAAG AAGCCTGCCG CTGCCAAGAA GGCGCCGGCC
AAGGCAGCCG CCAGCTCCAC CGCCGCTGCC AAGACCCCCG CCAAGCGCGG CCGCAAGCCC
AAGGCCAAGG AAGGCGGCGA CGACATCGAT GATGCCGACC TGTCCGATAT CGATGGCGAC
ATCGATGGCG AAGGTGAAGG CGAGTCCGAG GTCGAGACCG AAGTGGAAGT CGAGGTCGAG
ACCACTTCGG CCCCGGCCGA AAAGGTCAAG CCCCTGCGCA TGAAGATCAG CAAGGCCAAG
GAACGCGCCT TGATGAAGGA ATTCGGCCTG GACGAAACCG TCCTGACCGA AGAGGAAATG
TCCACCCGCC GCCAGCGCCT GAAGGCGCTG ATCAAGCTGG GCAAGACGCG CGGCTACCTG
ACGCACAGCG AAATCAACGA CCACCTGCCC GACAAGCTGG TCGATGCCGA GACGCTGGAA
GTCGTGATCT CCATGCTCAA CGACATGGGC GTGGCCGTCT ACGAGCAGAC GCCCGATGCG
GAAACCCTGC TGCTGAACAA CACGGGCCAG TCCGCCACTA CCGAAGAGGA AGCCGAGGAA
GAGGCCGAAG CCGCCCTGTC CACGGTGGAC TCCGAATTCG GCCGCACCAC CGACCCCGTG
CGCATGTACA TGCGCGAAAT GGGCACGGTC GAGCTGCTGA CGCGCGAAGG CGAAATCGAA
ATCGCCAAGC GCATCGAAGG CGGCCTGATG GACATGATGG AGGCCATCTC GGCCTCGCCT
GCCACCATCG CCGAGATCCT GGCCATGTCC GAGGAAATCC GCGAAGGCAA GGTCGTCATC
TCCACCATCG TCGACGGCTT CGTCAACGCC AATGAGAACG ACGACTACGT GGCCGAAGAA
GACTTCGACG AATACGACGA AGAGGACGAC GACGACGGCA AGGGCGGCTC CAAGGCGCTG
ACCAAGAAGC TCGAAGAGCT CAAGAACGAG GCGCTGCGCC GCTTCGACGC CATGCGCGAG
AACTTCGACA AGATGCACAA GGTGTACGAC AAGGAAGGCT ACGGCACGCC CACGTACATC
AAGGTGCAGA AGGCCCTGAC CGAAGAGCTG ATGACCATCC GCTTCACGGC CAAGACCATC
GAGAAGCTGT GCGACCTCGT GCGCGCCCAG GTGGATGACG TGCGCAAGAA GGAACGCGAG
CTGCGCAAGA TCATCGTGGA CAAGTGCGGC ATGCCGCAGG AGACCTTCAT CGCCCAGTTC
CCGCCCAACC TGCTGAACCT GCAGTGGGTG GTGCAGCAGG TCGCGGCCGG CAAGCCCTGG
AGCAACGTGC TCGAGCGCAA CATCCCGCCC GTGCAGGAGC TGCAGCAGAA CCTGATCGAC
CTGCAATCGC GCGTGGTCGT GCCGCTGGAC GAGCTCAAGC GCATCAACAA GCGCATGAAC
GATGGCGAGC GCGCCAGCCG TGACGCCAAG AAGGAGATGA TCGAGGCCAA CCTGCGCCTG
GTGATCTCCA TCGCCAAAAA GTACACGAAC CGCGGCCTGC AGTTCCTGGA CCTGATCCAG
GAAGGCAACA TCGGCCTGAT GAAGGCGGTG GACAAGTTCG AATACCGTCG CGGCTACAAG
TTCTCGACCT ATGCCACGTG GTGGATCCGC CAAGCCATCA CGCGCTCGAT CGCCGACCAG
GCGCGCACCA TCCGCATCCC GGTGCACATG ATCGAGACCA TCAACAAGAT GAACCGCATC
TCGCGCCAGC ATCTGCAGGA GTTCGGCTTC GAGCCCGATG CGTCCATCCT GGCGGCCAAG
ATGGAGATCC CCGAGGACAA GATCCGCAAG ATCATGAAGA TCGCCAAGGA GCCGATCTCC
ATGGAAACGC CGATCGGCGA CGACGACGAT TCGCACCTGG GCGACTTCAT CGAGGACACC
AACAACACCG CTCCCGTGGA CGCCGCCATG CAGGCCGGCC TGCGCGACGT GGTCAAGGAC
ATCCTCGACG GCCTCACCCC GCGCGAAGCC AAGGTGCTGC GCATGCGCTT CGGCATCGAA
ATGTCCACCG ACCACACGCT GGAAGAAGTG GGCAAGCAGT TCGACGTCAC GCGCGAACGC
ATCCGCCAGA TCGAGGCCAA GGCCCTGCGC AAGCTCAAGC ACCCGAGCCG CTCGGACAAG
CTGCGCAGCT TCATCGACTC GCTGTAA
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| Protein sequence | MPVSKSVKSK QAPEAPAKPK TSTTSSAPAK AAAGPKSAAS AAKAKKDTDV VTKSQAELKA
MADELLAAAT PKRGRKKAAE GDDAPAQTEK KPAAAKKAPA KAAASSTAAA KTPAKRGRKP
KAKEGGDDID DADLSDIDGD IDGEGEGESE VETEVEVEVE TTSAPAEKVK PLRMKISKAK
ERALMKEFGL DETVLTEEEM STRRQRLKAL IKLGKTRGYL THSEINDHLP DKLVDAETLE
VVISMLNDMG VAVYEQTPDA ETLLLNNTGQ SATTEEEAEE EAEAALSTVD SEFGRTTDPV
RMYMREMGTV ELLTREGEIE IAKRIEGGLM DMMEAISASP ATIAEILAMS EEIREGKVVI
STIVDGFVNA NENDDYVAEE DFDEYDEEDD DDGKGGSKAL TKKLEELKNE ALRRFDAMRE
NFDKMHKVYD KEGYGTPTYI KVQKALTEEL MTIRFTAKTI EKLCDLVRAQ VDDVRKKERE
LRKIIVDKCG MPQETFIAQF PPNLLNLQWV VQQVAAGKPW SNVLERNIPP VQELQQNLID
LQSRVVVPLD ELKRINKRMN DGERASRDAK KEMIEANLRL VISIAKKYTN RGLQFLDLIQ
EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKMNRI
SRQHLQEFGF EPDASILAAK MEIPEDKIRK IMKIAKEPIS METPIGDDDD SHLGDFIEDT
NNTAPVDAAM QAGLRDVVKD ILDGLTPREA KVLRMRFGIE MSTDHTLEEV GKQFDVTRER
IRQIEAKALR KLKHPSRSDK LRSFIDSL
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