| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_5024 |
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| Symbol | |
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| ID | 5750635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5561375 |
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| End bp | 5562778 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641300148 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001566038 |
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| Protein GI | 160900456 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.114157 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGGTA GTGATATCTC CAAAGACCAG GACGCCCAGC CGGCGTCCGA TGAGGCCGGC
GCGCAGCGCA AGGCCCGCCC TGCGCGCACG CGCGCTCCCA AGGCCGGGGC GCGGCCCGGC
GCCAAGCCTG TGCGCAAGCC GCGTCCGGCC GCCGAGGCGG TGCATGCCGA AGACACCGTG
CAAGAGCTGG TGCCGGCTGA TGCATCAGAG TCAAGCGACT CAGGGTCTGT CGAAGGCTAC
GGTTTTGCGG ACGTCATCTC GGGCGAGCTC GACGCCGCCG AAGAGCGCGA CGATGCCGCG
CCTGCCAAGC GCGTGCTGCT GCCCCAGGTC GATTCGCCCA AGCTGCACAA GGTGCTGGCC
CAGGCCGGGC TGGGATCGCG CCTCGAAATG GAGCAGCTCA TTCTTGAAGG CCGCATCTCG
GTCAACAACG AGCCTGCCCA TGTGGGCCAG CGCATCCAGT TCGGCGACCA GATCAAGGTC
AATGGCCAGC CCATCCGCTT TCGCATCGAC CCGCCGCCGG CGCGTGTCAT CGCCTATCAC
AAGCCCGTGG GCGAGGTCGT CACGCATGAC GATCCGCAAA ACCGTCCCAC GGTGTTCCGC
AAGCTGCCTC GCCTGCAGCA TGGCAAATGG CAATCGGTGG GCCGCCTGGA CCTGAACACC
GAAGGCCTGC TGCTGTTCAC CAGCTCGGGC GAGCTGGCCA ACTCCCTGAT GCACCCGCGC
TTCGGCCTGG AGCGCGAATA CGCAGCCCGC GTGCTGGGCG CGCTCAGCAA GGAAGAAAAG
CAGCGCCTGA CCGACGGCGT GCAGCTGGAA GACGGCGTGG CCGCCTTCGG CTCCATTGAG
GACGGCGGTG GTGAAGGCGC CAACTGCTGG TACCGCGTGA CCATTTCCGA AGGCCGCAAC
CGCGAAGTGC GCCGCATGTT CGAGGCGGTG GGCCATGCCG TGAGCCGGCT GATCCGCATC
CGCTACGGCG CCATGGTGCT GCCGCGAGGC CTCAAGCGCG GCGCCTGGGT GGAGCTGGAC
CAGGCCGATA TCCAGTCCCT GGCTTCGGCA GCCGGCATGC AGGCGCGTGC GCCCGCTGCA
CCCAAGCCCC CGGCCGGAGG CCGCCGTGGT GGCCCGGCCG ACCGCAATAC CGTTCGCCGC
GAAGGCGGCG GCCGCTACTT CGACGGCAAT CGCCCGGCGC CCAACGCCAT GCTCGACGGC
CCGCGTGCCA AGCCTGCCGC CAAGGGCGGC AAGGCTGACG GCGGCCAAGG ACAGGGCAAG
GGGCAGGGCG GCGCAGGCGG ACGGGGCAAG GGCGGCGGCA GCCAGCAGCC CGATCCGATG
CGTACATCGG TGGGCTACAT CGGCTCCGAC AGCCTGTCGC GTGCACGCCA GAACGCCAAG
CGCAAGCCGG GAGGACGCCG CTGA
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| Protein sequence | MTGSDISKDQ DAQPASDEAG AQRKARPART RAPKAGARPG AKPVRKPRPA AEAVHAEDTV
QELVPADASE SSDSGSVEGY GFADVISGEL DAAEERDDAA PAKRVLLPQV DSPKLHKVLA
QAGLGSRLEM EQLILEGRIS VNNEPAHVGQ RIQFGDQIKV NGQPIRFRID PPPARVIAYH
KPVGEVVTHD DPQNRPTVFR KLPRLQHGKW QSVGRLDLNT EGLLLFTSSG ELANSLMHPR
FGLEREYAAR VLGALSKEEK QRLTDGVQLE DGVAAFGSIE DGGGEGANCW YRVTISEGRN
REVRRMFEAV GHAVSRLIRI RYGAMVLPRG LKRGAWVELD QADIQSLASA AGMQARAPAA
PKPPAGGRRG GPADRNTVRR EGGGRYFDGN RPAPNAMLDG PRAKPAAKGG KADGGQGQGK
GQGGAGGRGK GGGSQQPDPM RTSVGYIGSD SLSRARQNAK RKPGGRR
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