| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4951 |
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| Symbol | |
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| ID | 5750558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 5473387 |
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| End bp | 5475984 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641300071 |
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| Product | ribonuclease R |
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| Protein accession | YP_001565965 |
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| Protein GI | 160900383 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.408138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATACCA AGAAAATGAA CCCTCACGCC AAAAGCGCCG ATGTGAACGA CGAAATCGAG
GGCAGTGTGC AGGGGCACCG CGACGGACAT GGCTTCGTCA TCCGCGATGA CGGCGAAGGC
GACATCTTCC TCCCCCCCAA TGAAATGCGT GCCGTGCTGC ACAAGGACCG CGTGAAGGTC
CGCATCGTGC GCCAGGACCG CCGCGGCCGG CCTGAAGGCC GCGTGGTCGA GATCATCGAG
CGCCCTGCGC ACAACATCAT TGGCCGCTTC TTGCAGGAAA GCGGTGTGTG GCTGGTGGCG
CCCGAGGACA AGCGCTACGG CCAGGACATC CTGATCCCCG CCAATGCCAC AGGATCGGCC
AAGATCGGCC AGGTGGTGGT GGTGGAACTG ACCGAGGCGC CTGCGCTGTT CGGCCAGCCC
GTGGGACGCA TCATCGAAGT GCTCGGTGAA GTCGATGATC CCGGCATGGA GATCGAGATC
GCAGTGCGCA AGTACGGCGT CCCGCATGTG TTTTCCGATG CTTGCCTGGC ACAGGCCAAG
GCGCTGCCGG ACAGGGTGCG GCCTGCCGAT TGCAAGAAGC GCATCGACCT GACCGATGTG
CCCCTGGTGA CCATCGATGG CGAGGACGCA CGCGATTTCG ACGATGCCGT CTACTGCGAG
CCCGCCAAGG TCGGGCGCAG CAAGGGCTGG CGCCTGCTGG TGGCGATTGC CGATGTGAGC
CACTACGTGA CCACGGGCAG CGCCATCGAC ATCGATGCCT ATGACCGCGC CACCAGCGTC
TATTTCCCGC GCCGCGTGAT CCCCATGCTG CCCGAGAAGC TGAGCAATGG CCTGTGCTCG
CTCAACCCCG ATGTGGACCG CCTGTGCATG GTCTGCGACA TGCTGATCAC CGCCAAGGGC
GAGATCCATG CCTATCAGTT CTATCCGGCG GTGATGCACA GCCATGCGCG CTTCACCTAT
ACCGAGGTGG CGGCCATCCT GGCCAATACG CGTGGCCCGG AGGCTGCCCG GCGCTCGGAG
CGCGTGGGTG ACTTGCTCAA TCTTCATGGC GTCTACCAGG CGCTGCTCAA GTCGCGCGAG
GCGCGCGGCG CCGTGGACTT CGAGACCACG GAGACGCAGA TCGTCTGTGA CGAGAACGGC
CGCATCGAGA AGATCGTGCC GCGCACGCGC AACGAAGCGC ACAAGCTGAT CGAGGAGGCC
ATGCTGGCCG CCAATGTCTG CAGTGCGGAC TTCATCGAGC AAAGCGGTCG CGTCGGCCTG
TTCCGCGTGC ACGACAAGCC CTCGCTGGAA AAGCAGGACA TTCTGCGCAA CTATCTGAAG
GCCATGGGGG TCGGTGTGGC GCTGAGCGAG AACCCGGCCA CGTCCGAGTT CCAGGCCATT
GCCAACGCCA CCAAGGACCG TCCCGACTCC CAGCAGATCC ACACCATGCT GCTGCGCTCG
ATGATGCAGG CCTTCTACAC GCCCGAGAAT TCGGGCCACT TCGGCCTGGC ATTCGACGCC
TATACGCACT TCACCAGCCC GATCCGCCGC TATCCCGATT TGCTGGTGCA CCGCGTGATC
AAGGCCGAGC TCGAAGGCAC GCACTATCGC CTGCCCGAGC TGCCCACCCC CGGAGAAGCC
GAGGCCAAGC TGGCCAAGCG TCTGGCATCA CGCGTCAGCC CACCCGGCCA GAAGCCGCGC
AAGCGCGCGC CCGCCGCCGA GGTCCAGGCC TGGGAGGCCG CCGGCCTGCA CTGCAGTGCC
AACGAGCGCC GGGCCGACGA GGCCAGTCGC GATGTCGAAG CCTGGCTCAA GTGCAAGTAC
ATGCGCGAGC ATCTGGGCGA GGAGTTCGGT GGCATGGTCT CTGCGGTGAC CACCTTCGGC
ATCTTCGTCA CGCTCGACGC CATGTATGTG GAGGGGCTGG TTCACATCAC CGAGCTGGGC
GGCGACTATT TCCGCTTTGA CGAGGCGCGC CAGGAACTGC GCGGCGAGCG CTCGGGCATT
CGCTATGGCA TCGGCACGCG GCTGCGCGTG CAGGTCAGCC GCGTGGACCT GGATGGCCGG
CGCATCGATT TCCGCCTGGT GCGCGATGGC GAAGAGCAGC CGGCCTCGGG CCGGCCCGGC
AGGACGCCGG CGCGCACGGA AACCCATCAG GGCGAAAAAT GGGGCCGTCG CGATGCCAAG
GAAAAAAGGG CGCAGCGCAA CTCGGGAGGC TCCGGCGGTG CAAGGCCTGA GTCTGATGCA
GCGGCGTCGG CCGGCAAGCA GGGGCGCAAG GCGTCTAAAA AGGCCATGGT CAAAGGGGTG
AACCTGGCCG CGCTGGAAGC TGAATATGCG AATGCCCAGC CGCGCCCGGC CACCACGGCG
CGGCAGAGCG ACATGGGCGA GGCGGTTGCG GAACCATCAT CCGCTGGCTC CGCTGCGCGG
CCCCGCAGAG GTCGGGCGTC CGAGGCGCGC AAGTCCGAGG CACGCAAGCC TGCGGCCACG
GATGCTGCTG CCCACGGCCT GCCGCAGCTG CCTCCACCGT CGCCGGTGCA GGCACTGCGC
GCCTTGGGCA AGAAGGCCTT GGGTGCCGTC AAGTCCAAGG TGACGGGCAA CACGTCCAAG
CCCCGGCGCA AGTCCTGA
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| Protein sequence | MYTKKMNPHA KSADVNDEIE GSVQGHRDGH GFVIRDDGEG DIFLPPNEMR AVLHKDRVKV
RIVRQDRRGR PEGRVVEIIE RPAHNIIGRF LQESGVWLVA PEDKRYGQDI LIPANATGSA
KIGQVVVVEL TEAPALFGQP VGRIIEVLGE VDDPGMEIEI AVRKYGVPHV FSDACLAQAK
ALPDRVRPAD CKKRIDLTDV PLVTIDGEDA RDFDDAVYCE PAKVGRSKGW RLLVAIADVS
HYVTTGSAID IDAYDRATSV YFPRRVIPML PEKLSNGLCS LNPDVDRLCM VCDMLITAKG
EIHAYQFYPA VMHSHARFTY TEVAAILANT RGPEAARRSE RVGDLLNLHG VYQALLKSRE
ARGAVDFETT ETQIVCDENG RIEKIVPRTR NEAHKLIEEA MLAANVCSAD FIEQSGRVGL
FRVHDKPSLE KQDILRNYLK AMGVGVALSE NPATSEFQAI ANATKDRPDS QQIHTMLLRS
MMQAFYTPEN SGHFGLAFDA YTHFTSPIRR YPDLLVHRVI KAELEGTHYR LPELPTPGEA
EAKLAKRLAS RVSPPGQKPR KRAPAAEVQA WEAAGLHCSA NERRADEASR DVEAWLKCKY
MREHLGEEFG GMVSAVTTFG IFVTLDAMYV EGLVHITELG GDYFRFDEAR QELRGERSGI
RYGIGTRLRV QVSRVDLDGR RIDFRLVRDG EEQPASGRPG RTPARTETHQ GEKWGRRDAK
EKRAQRNSGG SGGARPESDA AASAGKQGRK ASKKAMVKGV NLAALEAEYA NAQPRPATTA
RQSDMGEAVA EPSSAGSAAR PRRGRASEAR KSEARKPAAT DAAAHGLPQL PPPSPVQALR
ALGKKALGAV KSKVTGNTSK PRRKS
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