| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_4922 |
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| Symbol | |
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| ID | 5750529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 5440581 |
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| End bp | 5442434 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641300042 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001565936 |
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| Protein GI | 160900354 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.051397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCGC CGACGATTGC GTACGACCCT GTACTCGAAC GTCCGTCTTC GATGATGGCG
GCGTCCCTGC AACGCAGCCT GCGCGAGCAG CAGGCCCTGC TCGACAATGC CGGCGTCGGC
ATCGTCTTCA TTCGCCAACG CGTCATCGTC CGCTGCAACC AGTGCTACGC AGACATCTTC
GGCTACGCGG GCGAGCATGC GCTGGTGGGC ATCAACAGCG AACATCTGCA TCCCAGCCGC
GATGAGCTGC GCAGCCTGGG ACGCGAGGCC TACCGCACGC TGAGCGCCGG CCTGTCCTTT
CGCACGCAGC GCCGCCTGCG CCGCAAGGAC GGCAGCCTGT TCTGGGGAGA ACTCACGGGG
CGGCTCATCA ATCCGGGCGA TGCGCGCGAG GGATCGATCT GGATCGTGAG CGATATCGAC
GACCGCCTGC GTGCCCAGCA GGCCCTGAGC CAGGCCCACG AACTGCTGGA GCAGCAGGTG
CGCGACCGCA CACGCGAACT CAGCGCCACG GTGGAGAACC TGCACCGGGA GATTGCCGAC
CGCAAGCTGG ACCAGGAACG CATCTACTGG ATGGCGCACT ACGACGCGCT CACCGGCCTG
CCCAACCGCA CGCTGCTGGC CGAGCGCAGT GCCCGCGCCA TCGAGCTGGC CAAGGCCAAC
GACACGCCGC TGGCCGTGAT GTTCCTGGAC CTGGACCACT TCAAGCATGT CAATGATTCG
CTGGGCCATC GCGTGGGCGA TGCCCTGCTG GTGGAGATTG CCCGCCGCCT GCGTGCCGTC
GTGCGCGACC GCGATACGGT GGCCCGCATC GGCGGCGACG AATTCGTGCT GCTGCTGCCC
GGTGCCAATG CCCAGGGTGC GGCCCGCGTG GCCGGCAAGC TGCAGGAGGC GTCGCGCCAG
GCCTACCAGA TCGACCGCCA TGAGCTGACC ATTGCGCCGT CCATTGGCAT TGCGCTGTAC
CCGCGCGACG GCCACGACAT CGACTCGCTG ACCCAGGCCG CCGACGCGGC CATGTACCAC
GCCAAGCAGG CCGGCCGCAA CACCTACCGC TTCTTCACGC CGCAGATGCA GGCCCAGTCC
CTGCGCGCCC TGCAGCTGGA GAACGCGCTG CGCCGGGCGC TGGAGCGCAA TCAGCTGTAT
CTGCACTATC AGCCGCAGAT CACGCTGAGC ACGGGCCGCG TGCGCAGCGT GGAGGCGCTG
CTGCGCTGGG AGCACCCGGA ACTGGGCTCG GTCTCACCGG CCGAGTTCAT TCCCGTGGCC
GAGGACAGCG GCCAGATCCT GCAGATCGGC GAATGGGTGC TGCGCAGCGC CATGCAGCAG
TTGCAGGTCT GGCGCAATGC GGGCCTGTGC GACCTGAAGG TGGCCGTGAA TCTTTCGGCC
ATCCAGTTCC ATCAGCAGCA ACTGCCCGAG ATCATCAACC GCATCCTGCT CGACAGCGAC
CTGCCGGCCG ATTCTCTGGA GCTGGAGCTG ACCGAGGGCG TGGCCATCCA TGATCCGCGC
CAGGCGACAG CCACCATGGA CCGGTTGCGC GAGCACGGCG TGCGCCTGGC CATGGATGAC
TTCGGCACCG GCTATTCATC CCTGAGCCAG CTCAAGCGCT TTCAGATCTA CAAGCTCAAG
ATCGACCAGT CCTTCATCCA GGACCTGGAC CACGACAGCA ACGACCGCGC CATTGTCAGC
GCCATCATCC GCATGGCCCA GGCCCTGGGC ATGCAGACCA CGGCCGAGGG CGTGGAGACC
GAGGCACAGC TGGAGTTCCT GCGCGAGCAA GGCTGCGATG AGGCCCAGGG CTACCATTTC
AGCCGCCCGC TGGCACCAGA GGCGTTGGAG TCCTTCTTGC GCAGCCAGGG CTGA
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| Protein sequence | MSAPTIAYDP VLERPSSMMA ASLQRSLREQ QALLDNAGVG IVFIRQRVIV RCNQCYADIF
GYAGEHALVG INSEHLHPSR DELRSLGREA YRTLSAGLSF RTQRRLRRKD GSLFWGELTG
RLINPGDARE GSIWIVSDID DRLRAQQALS QAHELLEQQV RDRTRELSAT VENLHREIAD
RKLDQERIYW MAHYDALTGL PNRTLLAERS ARAIELAKAN DTPLAVMFLD LDHFKHVNDS
LGHRVGDALL VEIARRLRAV VRDRDTVARI GGDEFVLLLP GANAQGAARV AGKLQEASRQ
AYQIDRHELT IAPSIGIALY PRDGHDIDSL TQAADAAMYH AKQAGRNTYR FFTPQMQAQS
LRALQLENAL RRALERNQLY LHYQPQITLS TGRVRSVEAL LRWEHPELGS VSPAEFIPVA
EDSGQILQIG EWVLRSAMQQ LQVWRNAGLC DLKVAVNLSA IQFHQQQLPE IINRILLDSD
LPADSLELEL TEGVAIHDPR QATATMDRLR EHGVRLAMDD FGTGYSSLSQ LKRFQIYKLK
IDQSFIQDLD HDSNDRAIVS AIIRMAQALG MQTTAEGVET EAQLEFLREQ GCDEAQGYHF
SRPLAPEALE SFLRSQG
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