Gene Daci_4795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4795 
Symbol 
ID5750398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand- 
Start bp5290870 
End bp5291964 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content66% 
IMG OID641299911 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_001565809 
Protein GI160900227 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00190969 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.642599 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGACC TGTTCGACAA CCCGATGGGC CTGATGGGCT TCGAATTCGT GGAATTCGCG 
TCGCCCACGC CCGGCGTGCT GGAGCCGCTG TTCGAGAAGC TGGGCTTCAC CCTGGTGGCC 
AAGCACCGTT CCAAGAACGT GCTGCTGTAC CGCCAGGGAG GCATCAACTT CATCATCAAC 
AATGAGCCGG GGCAGGCCGC CTATTTCGCG GCCGAGCACG GCGCCTCGGC CTGCGGCCTG 
GCCTTCCGCG TCAAGGACGC GCACCAGGCC TACAAGCGTG CGCTGGAGCT GGGCGCGCAG 
CCCGTGGAAA TTCCCACCGG CCCCATGGAA TTGCGCCTCC CGGCCATCAA GGGCATCGGC 
GGCGCGCCGC TGTACCTGAT CGACCGCTTC GACGAAGGCA AGTCCATCTA CGACATCGAC 
TTCGAGTTCC TGCCCGGCGT GGACCGCAAC CCCAAGGGCC ACGGCTTCCA GGTGGTGGAC 
CACCTGACGC ACAACGTCTA CCGCGGCCGC ATGACCTACT GGGCGGACTT CTACAGCAAG 
CTGTTCAATT TCCGCGAGAT CCGTTACTTC GACATCTCGG GCGAGTACAC CGGCCTGGCC 
TCCAAGGCCA TGACGGCGCC CGACGGCCTG ATCCGCATTC CGCTGAACGA GGAATCGCGC 
CAGGGCGGCG GCCAGATCGA GGAGTTCCTC ATGCAGTTCA ACGGCGAGGG CATCCAGCAC 
ATCGCGCTGC TGACGGATAA CCTGCTGGAC TCCATCGACC AGCTGCAGAT GGCCGGCATT 
CCGCTGCTGA CCGCGCCCAA CGACATCTAC TACCAGAACC TGGAAGGCCG CCTGCCCGGT 
CACGGCCAGC CCGTGGGCGA GCTGCAGGCG CGCGGCATCC TGCTGGACGG CACGACCGAG 
GGCGGCCAGC CGCGCCTGCT GCTGCAGATC TTCTCCCAGC CCATGCTGGG CCCCGTGTTC 
TTCGAGTTCA TCGAGCGCAA GGGCAACTAC CGCGAGGGCT TCGGCGAAGG CAATTTCAAG 
GCCCTGTTCG AGTCCATGGA GCGCGACCAG ATCAACCGCG GCGTGCTGCA GGCCGAGGCA 
CCGCAGGGCG CCTGA
 
Protein sequence
MADLFDNPMG LMGFEFVEFA SPTPGVLEPL FEKLGFTLVA KHRSKNVLLY RQGGINFIIN 
NEPGQAAYFA AEHGASACGL AFRVKDAHQA YKRALELGAQ PVEIPTGPME LRLPAIKGIG 
GAPLYLIDRF DEGKSIYDID FEFLPGVDRN PKGHGFQVVD HLTHNVYRGR MTYWADFYSK 
LFNFREIRYF DISGEYTGLA SKAMTAPDGL IRIPLNEESR QGGGQIEEFL MQFNGEGIQH 
IALLTDNLLD SIDQLQMAGI PLLTAPNDIY YQNLEGRLPG HGQPVGELQA RGILLDGTTE 
GGQPRLLLQI FSQPMLGPVF FEFIERKGNY REGFGEGNFK ALFESMERDQ INRGVLQAEA 
PQGA