Gene Daci_4752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4752 
Symbol 
ID5750344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5208963 
End bp5211362 
Gene Length2400 bp 
Protein Length799 aa 
Translation table11 
GC content65% 
IMG OID641299857 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001565766 
Protein GI160900184 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4774] Outer membrane receptor for monomeric catechols 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0186383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.142458 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTCCT TGCCCCGTCA ACATCTGCTG AGCCTGGCCC TTGCCACGGC CTTTGGTTCC 
GTCTCGTTCT GGAGCACCGG GGCGGTGGCC CAGGCCACAG GGCAGGAGGC TGCCCAGGTG
TTCGATATCC ATGTGCCGGC CCAGGCCCTG GCTTCGGCCA TCAACGAGCT GTCCCGCCAG
ACGGGAACCC AGATGTTTGC CGCAGGCGAA CTGGTGGCCG GGCTCAGTTC CCGCGCCGTC
AACGGCCGCC TGACATCGGA GCAGGCCTTG CGGGAGCTGC TGGCCGGCAC GTCCCTGGAA
GCCACCAGGA CGCACAACGG AGGCTTCGCC ATCCGCCGTC CCGCAGCCTC CGGCGCGACC
TTGCCGACCA TCAACGTCAC GGACAGCGAA ACCGCAGCCG GCCCCGTGCA GGGCTATGTC
GCCCGGCGCA GCTCAACGGG CACGAAGACC GATACGCCCA TCCTGGAGAC ACCGCAGTCC
ATCACGGTCA TCGGTGCCCA GGAGATCGAG ACGCTGAAGT CGCAAAGCCT GCAGGATGCG
CTGGGCTACG CCGCCGGCGT CACCCGCGCC GAGGGCCTGG ACCGGACCTC GGACAGCCTG
TACCTGCGCG GATTCCGCAC CACGGGCATG TACCGGGACG GCAGCCTGTT CACGGCCAAC
ATCTACGACG GACGGCAGGA GCCCTACGGC CTGGAGCGCA TCGAGCTGCT CAAGGGCGCC
TCTTCGGTGA TCTTTGGCTC GGTCTCCCCG GGCGGCGTGG TCAACACCGT GAGCAAGCGG
CCCACCACGG AAAAAATCCG GGAATTGAAC ATCGACGCCG GAAGCTTCGG GCGCAGGCAG
GTCTCGGGTG ATTTTGCGGG CGCCCTGGAC GACGAGGGCA AATGGTCCTA CCGGCTGGTG
GCGCTCAAGC GCGACAGCGA CAGCTTCATC GACCATGTGC CCGATGACAG AACCTATATC
GCCCCGTCGC TCAAATGGCA GCCCGATGCG AACACCTCGC TGACACTGTT GGCCGAGGTC
CAGAAGGACC GCACCGCCTA CGTCTACGGA CTGCCCGCCT ACGGCACCCT GCTGCCCAAC
ATCAATGGAC AGATTCCCCG CAACCGCTTC ATCGGAGAGG CGGGACGGGA CAAATTCGAT
CTGGACCGCT ACTCCATCGG CTATCTCTTC GAACATGCCT TTTCCGAGAA GCTCAAGCTC
AGGAACAGCA TGCGCTACTA CAACGCAAAG AGCAGCTACT TCAGCACGGA CGGCTGGGGC
CTGTCCGCCG ACCAGCGCTC GGTGGTGGAG CGCTACTTCC AGCCGCGCTG GGACCGCTCG
TCGGCCTTCG TGACCGATAC CTCGCTGCAG TACCAGCTGG ACCAGGGCCG CGTCAAGCAC
ACCATGCTGG TGGGCTTCGA CTACGCCCTG CCAAAGCACG AGACCGAGCG CTATGAACAG
CAGGCCGCCG ACCTCGATGT CTTCAACCCG GTCTACGGCA AGCCGGTGGG GCCTGTCTCC
CCCTACTACC GCTCGTCCTG GAAGAACGAC TACAAGCGCC TCGGCATCTA TGCGCAGGAC
CAGATCAAGA TCGATGACAA GTGGGTGGTT CTGCTGGGCG GCCGCTATGA CAAGGTCCGC
TTCAACGAGA CGAACTTCTT CACCGGGGAC GTGAGCGCGG CCAATGAGAA AAGCTCGGCC
TTCACGGGCC GGCTGGGCGT GGTCTATCTC GCCGCCAATG GCCTTGCCCC CTTCTTCAGC
TACAGCGAAT CCTTCGAGCC CACCCAGGGC CAGGACCGCC TTGGATCACG GTTCAAGCCG
ACGACGGGGC AGCAGTACGA GGCTGGTGTC CGCTACCAGC CCAGCGGCTC CCGGGCCATG
GTTTCGGCGG CGGTCTTCCA GCTCACCCGC CAGAACCTGC TCGTGCCCGA CCCCCAGGAC
GCCAGCAGGG CGTTCAACAT ACAGGCCGGG GAAGTCCGTT CCCGCGGCTT CGAACTGGAG
GCACGAAGCT CCATCGGCCG CAATGTGAAC ATCATTGCCG CCTATGCCTA CACGGATGCG
CGCACCACGC AGGCAAGCCC CCTGCAGCCG GACGAACTGG GCAAGCGCTC CATCGGCGTG
CCCTACAACC AGATATCGCT GTGGGGCGAC TACAGCTTTG GAGACTTCGG GCTTGCCGGC
CTCAAGGTGG GCATGGGCGC CAGGTACCTG GGCCAGACAC GCGGCCTGGC CTATGGCGTT
CCCGTCTCGC TGCCGGCGTT CACCCTGGTG GATGCCATGG TCAGCTACAC CACCGGACCC
TGGCGCTTCG CCCTGAACCT CACCAACCTG ACCGACAAGA CCTATATCGC CAGCTGTTCC
TACGGCTGCT TCTACGGCGA GCCCCGCAAG GTGATCGGCA CGGCCACCTA TCGCTGGTAA
 
Protein sequence
MRSLPRQHLL SLALATAFGS VSFWSTGAVA QATGQEAAQV FDIHVPAQAL ASAINELSRQ 
TGTQMFAAGE LVAGLSSRAV NGRLTSEQAL RELLAGTSLE ATRTHNGGFA IRRPAASGAT
LPTINVTDSE TAAGPVQGYV ARRSSTGTKT DTPILETPQS ITVIGAQEIE TLKSQSLQDA
LGYAAGVTRA EGLDRTSDSL YLRGFRTTGM YRDGSLFTAN IYDGRQEPYG LERIELLKGA
SSVIFGSVSP GGVVNTVSKR PTTEKIRELN IDAGSFGRRQ VSGDFAGALD DEGKWSYRLV
ALKRDSDSFI DHVPDDRTYI APSLKWQPDA NTSLTLLAEV QKDRTAYVYG LPAYGTLLPN
INGQIPRNRF IGEAGRDKFD LDRYSIGYLF EHAFSEKLKL RNSMRYYNAK SSYFSTDGWG
LSADQRSVVE RYFQPRWDRS SAFVTDTSLQ YQLDQGRVKH TMLVGFDYAL PKHETERYEQ
QAADLDVFNP VYGKPVGPVS PYYRSSWKND YKRLGIYAQD QIKIDDKWVV LLGGRYDKVR
FNETNFFTGD VSAANEKSSA FTGRLGVVYL AANGLAPFFS YSESFEPTQG QDRLGSRFKP
TTGQQYEAGV RYQPSGSRAM VSAAVFQLTR QNLLVPDPQD ASRAFNIQAG EVRSRGFELE
ARSSIGRNVN IIAAYAYTDA RTTQASPLQP DELGKRSIGV PYNQISLWGD YSFGDFGLAG
LKVGMGARYL GQTRGLAYGV PVSLPAFTLV DAMVSYTTGP WRFALNLTNL TDKTYIASCS
YGCFYGEPRK VIGTATYRW