Gene Daci_4719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_4719 
Symbol 
ID5750311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5170110 
End bp5172776 
Gene Length2667 bp 
Protein Length888 aa 
Translation table11 
GC content65% 
IMG OID641299824 
ProductDNA gyrase subunit A 
Protein accessionYP_001565733 
Protein GI160900151 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.902316 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCAGT TTGCTAAAGA AACCCTGCCC ATCAGCCTCG AAGAGGAGAT GCGTCGCAGC 
TATCTCGATT ACGCAATGAG CGTGATCGTG GGCCGGGCGC TGCCCGATGC GCGAGATGGT
CTCAAGCCTG TGCATCGGCG CGTGCTGTTC GCCATGCACG AGCTCAACAA CGACTGGAAC
CGGCCGTACA AGAAGTCGGC GCGTATCGTC GGCGATGTGA TCGGCAAGTA CCACCCGCAC
GGAGACAGCG CGGTGTACGA CACCATCGTG CGCATGGCAC AGGATTTCTC GCTGCGCCAC
ATGCTGGTCG ACGGGCAGGG CAACTTCGGT TCGGTGGACG GGGACAGCGC GGCGGCGATG
CGTTACACCG AAATCCGCCT GTCCAAGATC TCCCACGAGA TGCTGGGCGA CATCGACAAG
GAGACGGTGG ACTACGGCCC GAACTACGAC GGCAGCGAGC GCGAGCCGCT GGTGCTGCCC
GCGCGGCTGC CCAACCTGCT GGTCAATGGT TCCTCGGGCA TTGCCGTGGG CATGGCCACC
AACATTCCTC CGCACAACCT CAACGAGGTG GTGGATGCCT GCCTGCACCT GCTGCAGACG
CCTCAGGCCA CCATCGACGA GCTGATGGAG ATCATTCCCG CGCCTGACTT CCCCACGGCC
GGCATCATCT ATGGCATCAA CGGTGTCAAG GAAGGCTACC GCACGGGTCG CGGACGCGTG
GTGATGCGCG CCAAGTGCCA CTTCGAGGAC ATCGATCGCG GCCAGCGCCA GGCCATCATC
GTTGACGAGC TGCCCTACCA GGTCAACAAG AAGACGCTGC AGGAGCGCAT GGCCGAGCTG
GTGCACGAAA AGAAGATCGA AGGTATCAGC CACATCCAGG ACGAGTCCGA CAAGTCGGGC
ATGCGCCTGG TGATCGAGCT CAAGCGCGGC GAAGTGCCCG AGGTCGTTCT CAACAACCTG
TACAAGCTGA CCCAGCTGCA AGACACCTTC GGCATGAACA TGGTGGCGCT GGTCGATGGC
CAGCCCAAGC TGTGCAACCT GAAGGATCTG GTCGAGGTCT TCCTGCAGCA CCGCCGCGAA
GTGGTCACGC GCCGCACGGT GTACGAGCTG CGCAAGGCGC GCGAGCGCGG CCATGTGCTG
GAAGGCCTGG CGGTCGCGCT GGCCAATATC GACGACTTCA TCGCCATCAT CCGCAACGCG
CCGACGCCGC CTGTGGCCAA GGCCGAGCTG ATGACGCGCA ACTGGGACAG CAAGCTGGTG
CGCGAGATGC TGACGCGCAC CCGCACCGAT GGCGGCGTGG TCAACGCCGA CGACTACCGC
CCCGACGGGC TGGAGCGCGA ATTCGGCATG CAGGCCGATG GCCTGTACCG CCTGTCCGAA
ACCCAGGCCC AGGAAATTCT GCAGATGCGC CTGCAGCGCC TGACCGGCCT GGAGCAGGAC
AAGATCGTCG CCGAGTACAA GGACGTGATG TCCGTCATCG AGGACCTGCT GGACATCCTG
TCCAAGCCCG AGCGCGTGTC GGCCATCATT GGCGACGAGC TCAAGCAGAT CAAGGCCGAG
TTCGGCCAGA GCAAGGTCGG CGCCCGCCGC AGCACGGTCG AATACAGCGC GCAGGACCTG
TCCACCGAGG ACCTGATCAC GCCCACCGAC ATGGTGGTCA CGCTCAGCCA CACGGGCTAC
ATCAAGAGCC AGCCGCTGTC CGAGTACCGC TCGCAAAAGC GCGGCGGACG CGGCAAGCAG
GCCACGGCCA CCAAGGAAGA CGACTGGATC GACCAGCTGT TCATCGCCAA CACGCACGAC
TACCTGCTGT GCTTCTCCAA CCGCGGCCGC CTGTACTGGC TCAAGGTCTG GGAAGTGCCC
GCAGGTTCGC GCGGCTCGCG CGGACGCCCC ATCGTCAACA TGTTCCCGCT GCAGGATGGC
GAGAAGATCA ACGTGGTGCT GCCGCTGACG GGCGAGTACC GCAGCTTCCC GGCCGACCAC
TATGTGTTCA TGTCCACCAG CATGGGCACC GTGAAGAAGA CGGCGCTGGA CGAGTTCTCC
AACCCGCGCA AGGCCGGCAT CATCGCCGTG GGCCTGGACG AGGGCGACTT CCTGATCGGC
GCAGCCCTCA CCGACGGCAA GCATGACGTG ATGCTGTTCA GCGACGGCGG CAAGGCCGTG
CGCTTCGACG AGAACGACGT GCGCCCCATG GGCCGCAACG CGCGCGGCGT CAAGGGCATG
AACCTGGAAG AAGGCCAGAG CGTGATCGCC ATGCTGGTGG CCGAGGACGA GTCGCAAAGC
GTGCTCACGG CCACCGAGAA CGGCTACGGC AAGCGCACCT CCATCGTGGA GTACACGCGC
CATGGCCGCG GCACCAAGGG CATGATTGCC ATCCAGCAGT CCGAGCGCAA CGGCAAGGTC
GTCGCCGCCA CCCTGGTGCA TGCCGATGAC GAAATCATGC TGATCACCGA CACTGGCGTG
CTGGTACGTA CCCGGGTCTC GGAAATCCGC GAACTGGGCC GCGCCACCCA GGGCGTGACG
CTGATCTCCC TGGACGAAGG CGCCAAGCTC GGCGGCCTGC AGCGCATCGT TGAAAACGAT
GCCAGCGAAG TCGAGGACGA GGCCACGGGC GAGGAGGCCA CAGGCGGCGA CGAAGCCGCT
GCCGAAGGCA CGGGCGAGCC CGCCTGA
 
Protein sequence
MTQFAKETLP ISLEEEMRRS YLDYAMSVIV GRALPDARDG LKPVHRRVLF AMHELNNDWN 
RPYKKSARIV GDVIGKYHPH GDSAVYDTIV RMAQDFSLRH MLVDGQGNFG SVDGDSAAAM
RYTEIRLSKI SHEMLGDIDK ETVDYGPNYD GSEREPLVLP ARLPNLLVNG SSGIAVGMAT
NIPPHNLNEV VDACLHLLQT PQATIDELME IIPAPDFPTA GIIYGINGVK EGYRTGRGRV
VMRAKCHFED IDRGQRQAII VDELPYQVNK KTLQERMAEL VHEKKIEGIS HIQDESDKSG
MRLVIELKRG EVPEVVLNNL YKLTQLQDTF GMNMVALVDG QPKLCNLKDL VEVFLQHRRE
VVTRRTVYEL RKARERGHVL EGLAVALANI DDFIAIIRNA PTPPVAKAEL MTRNWDSKLV
REMLTRTRTD GGVVNADDYR PDGLEREFGM QADGLYRLSE TQAQEILQMR LQRLTGLEQD
KIVAEYKDVM SVIEDLLDIL SKPERVSAII GDELKQIKAE FGQSKVGARR STVEYSAQDL
STEDLITPTD MVVTLSHTGY IKSQPLSEYR SQKRGGRGKQ ATATKEDDWI DQLFIANTHD
YLLCFSNRGR LYWLKVWEVP AGSRGSRGRP IVNMFPLQDG EKINVVLPLT GEYRSFPADH
YVFMSTSMGT VKKTALDEFS NPRKAGIIAV GLDEGDFLIG AALTDGKHDV MLFSDGGKAV
RFDENDVRPM GRNARGVKGM NLEEGQSVIA MLVAEDESQS VLTATENGYG KRTSIVEYTR
HGRGTKGMIA IQQSERNGKV VAATLVHADD EIMLITDTGV LVRTRVSEIR ELGRATQGVT
LISLDEGAKL GGLQRIVEND ASEVEDEATG EEATGGDEAA AEGTGEPA