| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3987 |
|---|
| Symbol | |
|---|
| ID | 5749570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4392864 |
|---|
| End bp | 4393556 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641299085 |
|---|
| Product | ribose-5-phosphate isomerase A |
|---|
| Protein accession | YP_001565003 |
|---|
| Protein GI | 160899421 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.195243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0478731 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAT CTGCTGCCTC TTTTTCCCAA GATGAACTCA AAGCCCTGGT CGGGCAAGCC
GCCCTGGCCT ATGTGGTGCC CGGCGAAATC GTCGGCGTTG GCACCGGCTC CACGGTCAAC
AAGTTCATCG ATGCACTGGC CACCATCAAG GACCAGATCC CGGGCGCCGT GTCCAGCTCC
GTGGCCAGCA CCGAGCGCCT GAAGGCGCTG GGCATCAACG TGCTGGATGC CAACGAAGTC
GCCAGCCTTT CGGTCTACAT CGACGGAGCC GACGAGATCG ACGGCCGCGG CTACATGGTC
AAGGGTGGCG GCGCCGCGCT GACGCGCGAG AAGATCGTCG CTGCGCTGGC CGAGCGCTTT
GTCTGCATTG CCGATGCCTC CAAGCGCGTC GAGGTACTCG GAGACTTTCC GCTGCCTGTG
GAGGTGATTC CCATGGCGGC TGCACAGATT GCGAACCACT TCAAGGCCAT GGGTGGCCGT
GCCGAGATCC GCATGAAGGA CGGCGCGCCC CTGGTGACGG ACAACGGCCA GCACATTCTT
GATGTGCGTG GCCTGAAGAT CGCCGAGCCC CTGGCCTTCG AGTCCGAGGT CAACCAGTGG
CCCGGCGTGG TGACCGTGGG AGTGTTTGCG CACCAGAAGG CATCGGTCTG CCTGCTGGGC
ACGCCCGAGG GCGTGCAGAC GCTCAACTAT TGA
|
|---|
| Protein sequence | MTTSAASFSQ DELKALVGQA ALAYVVPGEI VGVGTGSTVN KFIDALATIK DQIPGAVSSS
VASTERLKAL GINVLDANEV ASLSVYIDGA DEIDGRGYMV KGGGAALTRE KIVAALAERF
VCIADASKRV EVLGDFPLPV EVIPMAAAQI ANHFKAMGGR AEIRMKDGAP LVTDNGQHIL
DVRGLKIAEP LAFESEVNQW PGVVTVGVFA HQKASVCLLG TPEGVQTLNY
|
|---|
| |