| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3946 |
|---|
| Symbol | |
|---|
| ID | 5749529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4345350 |
|---|
| End bp | 4346267 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641299044 |
|---|
| Product | pirin domain-containing protein |
|---|
| Protein accession | YP_001564962 |
|---|
| Protein GI | 160899380 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1741] Pirin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.145016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.183598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCG CTAACGCTGC GGCAGCCACG ATTCCCAAGG AGAAGCAAAT GCTCAAGAAG
ATGCTCGGCG TCTACAGCGC TCCCCGTGCC CATTGGGTGG GCGACGGCTT TCCCGTGCGC
TCGCTGTTCA GCTATGGCAA CCATGGTGCG GCTCTGAGCC CCTTTCTGCT GCTGGACCAC
GCAGGCCCCG CCAGCTTCGA GCCGGCTGCC CAGCCTCGCG GCGTGGGCGT GCATCCGCAC
CGCGGCTTCG AGACCGTGAC CATCGTCTAT GAGGGCGAAG TCGAGCACCG GGACTCGACC
GGTGCTGGCG GGCTGATCGG CCCTGGCGAC GTGCAGTGGA TGACGGCTGG CGCGGGCATC
CTGCATGAGG AATTCCATTC CCATGCGTTC ACCGAACGCG GCGGGCGGCT GGAGATGGTG
CAGCTGTGGG TGAACCTGCC CGCCAGGGAC AAGTCGGTTG CGCCTGGCTA CCAGACCCTG
GTGGATGGAC AGATCCCGTC CGTGGAACTG CCAGGCGGCT CAGGCCGGGT GCGGGTGATT
GCCGGAGCCT TTGGCAACAG CCAGGGGCCG GCGCGCACCT TCACGCCCAT CAATGTCTGG
GACCTGCGCC TGAAAGCCGG CAGCAGCACC GAACTGTGCG CCAAGCCTGG ACATACGCTG
GCCCTGGTCG TGCTGCATGG CACGGTGCTG GTCAACGACG ACGAGGTTGT TCGCGAAGGC
CAGCTGGTGC ACTTCGATCG CGAGGCTGAC ATGGTGCGCC TGGAGGCCAA CAACGACGCC
ACCGTGCTGT GGCTCGAGGG CGAGCCCATC GAGGAGCCCG TGGTGGGCCA CGGCCCGTTC
GTGATGAACA GCGAGGCCGA GATCCGCGAG GCCATTGCCG ACTTCAACGC TGGCCGATTC
GGGCGCATGG CAGCTTGA
|
|---|
| Protein sequence | MAGANAAAAT IPKEKQMLKK MLGVYSAPRA HWVGDGFPVR SLFSYGNHGA ALSPFLLLDH
AGPASFEPAA QPRGVGVHPH RGFETVTIVY EGEVEHRDST GAGGLIGPGD VQWMTAGAGI
LHEEFHSHAF TERGGRLEMV QLWVNLPARD KSVAPGYQTL VDGQIPSVEL PGGSGRVRVI
AGAFGNSQGP ARTFTPINVW DLRLKAGSST ELCAKPGHTL ALVVLHGTVL VNDDEVVREG
QLVHFDREAD MVRLEANNDA TVLWLEGEPI EEPVVGHGPF VMNSEAEIRE AIADFNAGRF
GRMAA
|
|---|
| |