Gene Daci_3936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3936 
Symbol 
ID5749519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4335326 
End bp4336021 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content50% 
IMG OID641299034 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001564952 
Protein GI160899370 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.426907 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.200888 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTCCA ATACGAATCA TAGAAAAGAT TTGAATATAT CCGTACTGCT GGCCGATGAT 
CATCCTGGAA TCATCTCAGG CATCCGGCAT GAGCTGTCTT CCGAGCTGGA AATCCTGTTG
AAAGCCAGTG TTTCAAATTC AACCGATCTG GTAAAAAAAT TGGATGAGGG TGGCTTTGAC
GTGCTTGTGT CGGATTACTC CATGCCTACA GGTCAATACG GAGATGGCTT GAATCTGTTT
GGCTACATAT CCAGAAGATT TCCGAACCTG GGTTTGGTGG TTCTGACCAT GCTGGACAAT
TCGGCCATTC TCCAGGCGCT GGGCAAGGTA TCGAACATCA GCATCGTTAG CAAGGCGGAC
CCGGTGCTGC ATCTGGTTCC AGCCATTCAT GCCGCCTATA CAGGAGGGAC ATACTTCTCT
CCCGCCATTT CCGAGCGACT GGAAAAAATG AATGCGGGTG TCATGGGCGG CGAAGGAAAA
TCACCGGGGG TGCTCAGTCC CAAGGAATCG GAGGTGGTAA GGCTTTATGC GGCCGGTTTG
CGTATCGACG AGATCGCGGC CAAGCTGAAC AGAAGCAAGA AAACCATCAG TACCCAGAAA
GTCAAGGCCA TGCACAAGCT TGGAATTGAA CGGGACATTG ATCTGATGAA GTATGCCCTT
GAGTGCGGAT GGGTGACCTC ATCGAGATCT CAATGA
 
Protein sequence
MFSNTNHRKD LNISVLLADD HPGIISGIRH ELSSELEILL KASVSNSTDL VKKLDEGGFD 
VLVSDYSMPT GQYGDGLNLF GYISRRFPNL GLVVLTMLDN SAILQALGKV SNISIVSKAD
PVLHLVPAIH AAYTGGTYFS PAISERLEKM NAGVMGGEGK SPGVLSPKES EVVRLYAAGL
RIDEIAAKLN RSKKTISTQK VKAMHKLGIE RDIDLMKYAL ECGWVTSSRS Q