| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3864 |
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| Symbol | |
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| ID | 5749447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4256651 |
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| End bp | 4259437 |
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| Gene Length | 2787 bp |
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| Protein Length | 928 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641298962 |
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| Product | type VI secretion ATPase |
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| Protein accession | YP_001564880 |
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| Protein GI | 160899298 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00372415 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGGCC CCCATTCATC CACTCTTTTT CCGCACCCAA GACCCATGAC AGAAATCAGC
CGCCAATCCC TCTTCGGCAA GCTCAACCCG CTGCTGTTCA AGTCGCTGGA AGGCGCCACC
GTGTTCTGCA AGCTGCGCGG CAATCCCTAT GTGGAGCTGG TGCACTGGCT GCACCAGCTG
CTGCAGGAAA ACGATTGCGA CCTGATCCGC ATCCTGCGCC ACTTCGACAT CGCCTCCGAC
CGCCTGGCCG CCGATGTGCT GCGCCGTCTG GACCAGTTGC CGCGCGGCGC CACCTCGATC
AGCGACTTCT CCGAGCACAT AGAGACCGCC ATCGAGCGCG GCTGGGTCTA TGCCACGCTG
ATGTTCAACG ACAGCCAGAT CCGCAGCGCC TATCTGCTGT CGGGCATGGT GCGCACGCGC
TCGCTGGCCA ATGAGCTGCG CTCCATCTCG CGCGAATTCG ACAAGATCTC CGAGCCCGCG
CTCAGCGATG CCTTCGCCCG CCTGCTGCCC GACTCGCCCG AGGCTCGCAT GCGCGCGGCC
GATGGCAGCG GGCTGGAAGG CACGCCGGGC GAAGCCAGCC AGGCCACGGG CGCCGCGCCC
GGCCAGGGCG GTGCGCTGCA GCAGTACACG GTGGACCTGA CGGCCCGCGC CAAGGCCGGC
GAGCTGGACC CGGTCACGGG CCGCGACGAC GAAGTGCGCC AGATGGTGGA CATCCTGCTG
CGCCGCCGCC AGAACAACCC CATCCTGGTG GGTGAGGCCG GCGTGGGCAA GACCGCCGTG
GTCGAAGGCC TGGCCCTGCG CATCGCCCAG GGCGACGTGC CGCCGCCGCT GCAGGGCGTG
GAGCTGCGCG TGCTGGACGT GGGCCTGCTG CAGGCCGGCG CCAGCATGAA GGGCGAGTTC
GAGAACCGCC TGCGCGGCCT GCTGGACGCC GTGCAGTCCA GCACCACGCC CATCGTGCTC
TTCATCGACG AAGTCCACAC CCTGGTGGGC GCGGGCGGCC AGGCCGGTAC GGGCGATGCC
GCCAACCTGC TCAAGCCTGC CCTGGCGCGC GGCACGCTGC GCACCATCGG CGCCACCACC
TGGGCCGAGT ACAAGAAATA CATCGAAAAA GACCCGGCCC TGACCCGCCG CTTCCAGCTC
GTTCAGGTGC ACGAGCCCGA CGAGCCCCGC GCCGTGGACA TGCTGCGCGG CGTGGCCGCC
AAGCTGGAAA ACCATCACCA GGTGCGCATT GCGGCCGACG CGGTGGCCGC GGCCGTCAGC
CTGTCGCACC GCTACATTCC CTCGCGCCAG TTGCCCGACA AGGCCGTCAG CCTGCTGGAC
ACGGCCTGCT CGCGCGTGGC CATGGCCCTG CATGCCACGC CCGCCCAGCT TGAAGCCGTG
CAGCGCCGCA TCGAGGCCCT GGGCGTGGAG CAGGAAGTGC TGCTGCGCGA GGCCGCCCTC
GGCCTGCCCA CGGCCGAGCG CCTGCAGGCG CTGGAAACCG ACCTGGCCAG CCTGCGCGAG
CGCCAGGCCA CGCTGGCCGA GCGCTTCGGC CAGGAAAGCG CGCTGGCCCG CCGCATCCTG
GAAACCGAGG CCGCCCTCAT GGGCCTGAAG CCACCGGTCT TCTCCACCGG CGCCGCCACA
GACCCGTCCG CTGCGGCGCC GGAGACGGCC GCCGAAGCCA CCGCAACCGA ACCTGCCGAG
CCCCCCAGCG TGGCCACGCT GGAAGCGCTG CGCCGCCAGC TCGCCGAGCT GCAGGGCGAT
GCCCCGCTGC TGCAGCCCGT GGTCGATGCC GGCGTGGTCG CCGCCGTGGT GGCCGAGTGG
ACCGGCATTC CCGTGGGCCG CATGGTGCGC GACGAGGTGC AGTCCGTGCT CTCGCTGGCC
GACACGCTGG AGAAGCGCGT CATCGGCCAG CGCCACGGCC TGGAGGCCAT CACGCGCCGC
ATCCAGACCT CGCGCGCGCG GCTGGACGAT CCGGGCAAGC CCATCGGCGT GTTCCTGCTC
GCCGGCCCCT CGGGCGTGGG CAAGACAGAA ACCGCCCTCT CCCTGGCCGA AGCCCTGTAT
GGCGGCGAGC AAAACCTCAT CACCATCAAC ATGAGCGAGT TCCAGGAGGC GCACACCGTC
TCCACCCTCA AGGGCGCGCC ACCGGGCTAC GTGGGCTACG GCGAAGGCGG CGTGCTCACC
GAGGCCGTGC GCCGCCGCCC CTACAGCGTG GTCCTGCTCG ACGAAATCGA AAAGGCCCAC
TCCGACGTGC ACGAGATGTT CTTCCAGGTC TTCGACAAAG GCTGGATGGA AGACGGCGAG
GGCCGCTACA TCGACTTCAA GAACACCGTC ATCATCCTGA CCTCCAACGT GGGCTCGGAC
CTGATCGCCA ACATGTGCCG CGACCCGGAC CTGGCGCCCA CGCCGGAAGG CCTGGCCCAG
GCCGTGCGCC AGCCGCTGCT GCAGACCTTC CCCGCCGCGC TGCTGGGCCG CCTGACGGTG
GTGCCCTACT ACCCCATCTC CGACGCCATG CTGGAGCAGA TCATCCGGCT GCAGATGCTG
CGCATACAGC GGCGCATCGA GGAGCGCCAC GGCGCGCAGT TCAGCTTCGA CGAAGCCGCC
GTGGACCTGG TGCGCCGCCG CTGCAGCGAG GTCGAGTCCG GCGCGCGCAT GGTGGACGGC
ATCCTCACCC AGAACCTGCT GCCGCGCATG GCAACCCACT TCCTGCAGGC CACCGTGGAA
GGCCAGGAAC TGCAAAGCCT GCACGCCGGC GCCAGCGGCG ACGACTTCAC GCTGGACGTG
CGCACCCGCG CTGCGGAGCC CGCATGA
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| Protein sequence | MPGPHSSTLF PHPRPMTEIS RQSLFGKLNP LLFKSLEGAT VFCKLRGNPY VELVHWLHQL
LQENDCDLIR ILRHFDIASD RLAADVLRRL DQLPRGATSI SDFSEHIETA IERGWVYATL
MFNDSQIRSA YLLSGMVRTR SLANELRSIS REFDKISEPA LSDAFARLLP DSPEARMRAA
DGSGLEGTPG EASQATGAAP GQGGALQQYT VDLTARAKAG ELDPVTGRDD EVRQMVDILL
RRRQNNPILV GEAGVGKTAV VEGLALRIAQ GDVPPPLQGV ELRVLDVGLL QAGASMKGEF
ENRLRGLLDA VQSSTTPIVL FIDEVHTLVG AGGQAGTGDA ANLLKPALAR GTLRTIGATT
WAEYKKYIEK DPALTRRFQL VQVHEPDEPR AVDMLRGVAA KLENHHQVRI AADAVAAAVS
LSHRYIPSRQ LPDKAVSLLD TACSRVAMAL HATPAQLEAV QRRIEALGVE QEVLLREAAL
GLPTAERLQA LETDLASLRE RQATLAERFG QESALARRIL ETEAALMGLK PPVFSTGAAT
DPSAAAPETA AEATATEPAE PPSVATLEAL RRQLAELQGD APLLQPVVDA GVVAAVVAEW
TGIPVGRMVR DEVQSVLSLA DTLEKRVIGQ RHGLEAITRR IQTSRARLDD PGKPIGVFLL
AGPSGVGKTE TALSLAEALY GGEQNLITIN MSEFQEAHTV STLKGAPPGY VGYGEGGVLT
EAVRRRPYSV VLLDEIEKAH SDVHEMFFQV FDKGWMEDGE GRYIDFKNTV IILTSNVGSD
LIANMCRDPD LAPTPEGLAQ AVRQPLLQTF PAALLGRLTV VPYYPISDAM LEQIIRLQML
RIQRRIEERH GAQFSFDEAA VDLVRRRCSE VESGARMVDG ILTQNLLPRM ATHFLQATVE
GQELQSLHAG ASGDDFTLDV RTRAAEPA
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