| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3846 |
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| Symbol | |
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| ID | 5749429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4239050 |
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| End bp | 4242706 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641298944 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001564862 |
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| Protein GI | 160899280 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0318709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGTC GCATCGCCTC ATGGCTGTTC AACCGCTACA TGCTGGAGCT TCTGGGCCTG
GTGGCCCTGA GCCTGCTCAT CTGGTTCGTC GGCCCGCTCG TCTTCATCCA GCCCTACCAG
CCGCTGGGCA GCCCCACCGT GCGCTGGTGG ATCATCGCCG GCCTGTTCAT CCTCTGGTTC
CTGCGCCTGC TGCTGCGCTG GTGGCGCGCA CAGCGCATGA ACGAGCACCT CATGACCGGC
CTGGCCCGCT TGACCTCGCC GCGCGAGGCG GACGGCACGC CCGCAGCAGG CTCCGAGGAA
GTGGCCGAGC TGGAGTCGCG CTTCAAGGAA GCCCTGGACA CGCTGAGCAA GACCCGCTTC
GGCCAGACCG AAGGCGGCCT GTTCGGCCGC TGGAACAAGC GCTACATCTA CCAGCTGCCC
TGGTACCTGA TCATCGGCTC GCCGGGCTCG GGCAAGACCA CGGCCCTGAT CAACTCGGGG
CTGGACTTCC CGCTGGCGGC CCAGTTCGGC AAGCGCGCCA TCCCCGGCAT AGGCGGCACG
CGCAACTGCG ACTGGTGGTT CACCGACCAG GCCGTGCTGC TGGACACGGC CGGCCGCTAC
ACCACCCAGG AAAGCGATGC GGAGCAGGAC AAGGCAGCCT GGAAGGGCTT CATGCAGCTG
CTCAAGCGCT TTCGCGGACG CCAGCCCGTC AACGGCGTGA TCGTCACGCT CAGCGTGCAG
GAACTGCTCA GTGCCAGCGA CGCCGAGCGC GCCCAGCTGG CCCAGCTGAT CGGCCTGCGC
CTGAGCGAGC TGTGCGAGGA GCTGACCATC CGCTTCCCCG TCTACGTGCT GGTCACCAAG
AGCGACCTGC TGGCGGGCTT CAACGAGTTC TTCGGGGCCA TGAGCCGCGA GGAGCGCGCC
CAGGTCTGGG GCTTCACCTA TCCCTATGAC GAAAAGACCC AGCGCTCGCC CGCCAGCGAC
CCGCAGGCCG CCAGCGCCCT GTACATGGAG GAGTTCGACG CACTGGTCGC CCAGATCAAC
CGCCTGCTGC CCCAGCGGCT GATGACCGAG CCCGACCTTG CGCGCCGCAG CCTGCTCTAC
GCACTGCCCC AGCAGTTTGC CGGCCTCAAG GACGTGGTGC GCGACACGCT GGATGCGGCG
TTCTCCGCCT CGCGCTTCAA GGAAAAACCG TTGCTGCGCG GCGTCTACTT CACCAGCGGC
ACGCAGGAGG GCATGCCCTT CGACCGCGTG ATGTCGGCCC TGTCGCGCCG CTTTGCGCTG
CGTGGCCGCC TGCCGGCCGA TGCCGTGCCG CAGCAGGGCC GCAGCTACTT CCTGGAGTCG
CTGTTCAAGG ACGTGATGTT CAACGAGTCC GGCCTGACCG GGCGCAACGC CAAGAAAGAG
CGCCAGCTGC GCCTGATGCA GGCCGCCGGC CTGTGCGCGC TGCTGCTGGC CCTGGGCGGC
GCGGCCCTGG CCTGGACGCT GAGCTACGAG AACAACCAGC GCTACCTGAA CGAAGTGGCC
GACAACGCCG GCACGCTGCG CCAGGCCGTG GAGGAATCCA AGGCCACCGA TCCCGACAAC
GTGGTCGCCC TGGTGCCCAT GCTCAATCAC GCGGCGCGCG TGGCGCAGAG CAGCCGCTTC
GAGGAATCGG CCCCGCTGGG CTGGCGCTGG GGCCTGCTGC AGGTGCCCAA GGTGCAGACG
GCCGCCCACG CCACCTACCT GCGCCTGCTG GAAGATGCCT GGCTGCCGCG CCTGAGCAGC
CATGTCGCGC GCTCGCTGCG CCAGGTCAGC ACCGGCAGCC CCGAGGCCAG CTACGAAACG
CTCAAGGCCT ATCTCATGCT CTACGAGCCC GACCACTTCG ACGCCACCTT CGTCAAGGCC
TGGCTGCGCA GCGACTGGGA AAACACCCTG CCCCAGCATC TGGTGCAGGC TGGCCTGGTG
GACCAGCTGT CCGAGCACCT GGACCGCCTC ATCGACGGCC GCGTGGTGGT CTCCGCCCAG
CCCATCGACG CCAACCTGGT CGCCGAAGTG CGCCAGCGCC TGGCCCAGAT GTCGCCCGCC
CAGCGCGCCT ACAGCCGCCT CAAGCAGCTG CTGAACACCG GCGACAAGCT GCCGCCCGAC
TTCAGCGTGG TGCGTGCCAG CGGGCCCGAG GCGCCCCAGG TCTTTGCGCG TGCCAGCGGC
AAGCCGCTCA CCCAGGGCAT CAGCGGCCTG TTCACCTATG ACGGCTACCA CGGCCTCTTC
CTGCACGAGC TGCCCAAGGT CACCACCTTG CTGGCCAAGG AGGAAACCTG GGTGCTGGGC
CAGGCCGAAG GCCGGCGCAG CGTGGCCCAG GAAGTGCTCA CGGGCCAGCT GGCCAACGAG
GTCAAGCGCC TGTACCTCAT GGAGTACGCG CGCCTGTGGG AAACCTTCCT GGCCGACATC
CGACCCATAC GCACGGCCTC GCTGGAGCAG GCCGGCGAGC AGGCCCGCCT GTACTCGTCC
GCCAACTCCA GCCTGGAGCA GTTCATCCGC GCCGTGGCAC GCGAGACCAC GCTGGCCCGC
CGCCCGGACC AGCAGGAAGG CGGCGGCTCG GGCAGCACCA GCAGCTGGCT GGGCGAGAAG
CTGCAGCGCA TCCGCGAGGA ACAGCACCAG CTCAGCCGCC TGACCGGCAA GCCGCTGAAC
GTGGGCGGCA TGCTGGCCAC CGGCACGCTG GAGGCCGACA TCGTGGACTT CCGCTTCCGC
GAATACCGGC GCCTTGCCAC CAGCAACGGC TCGGGCCCGG CGCCCATCAC CGCCAGCCTG
CAGGTGCTCA ACGAGGCGGC GGCCGTCATC GCCTCGGCGC GCCAGCAGGT GATCCAGGGC
GGCGGCGTGC CTCCCTCGCT GAGCGGCACG CTGGAGAAGG TGCGCTCGGA AGCCAAGCGC
GTGCCGCCTC CGCTCAACAG CATGTACGAG GCCCTGGCCA CGTCCACCTC GTCCTTCGTG
GGAAGCAGCG TGCGCAGCAC GCTGGGCGGC AACCTCAACG CCACCATCGG CGACTTCTGC
CGCCGGGCCA TCCTGGGCCG CTACCCCTTC ACGCGCAGCG CCACGCGCGA CGTGACCACG
GACGACTTCG CCCGCCTGTT CGCCACCGGC GGCACCATGG ACGAGTTCTT CCGCACCCAG
CTGCAGACCA TGGTGGACAT CTCCACCGTG CCCTGGACCT TCAAGCAGGG TGTGGACGGC
ACGCCGGTGG GGGGCTCTGC CTCGCTGGCC GCCTTCCAGC GCGCGGCCTC CATCCGCGAC
GTGTTCTTCC GCGCAGGCGG CAACACGCCC GGCATCCGGC TGGAGATCAA GCCGCTGGAC
ATGGACGCCT CCATCTCCCA GATGGTGCTG GACGTGGACG GCGAAATCGT GCGCTACCAG
CACGGCCCGC AAATCCCCAA GGCCGTCTCC TGGCCGGGCA CGCGCGGCAC CGGCCAGGCC
CGGCTGCAGA TCACGGCCGC CGGCGCCCAG AACACCGGCA TCGTGACCGA AGGCCCCTGG
GCGCTGCACC GCCTGTTCGA CCGTGCCCAG ATCCTGCCGG GCAACTCGCC CGAGCGTTTC
ACGGCCATCT TCACCATCGA CGGACGCAAG CTGCGCATGG AAGTCACCAC CAGCAGCGTC
CTCAACCCAT TCCGGCTCAA GGCCATGGAG GAATTCGAAT GTCCGGACCG GCTGTGA
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| Protein sequence | MIRRIASWLF NRYMLELLGL VALSLLIWFV GPLVFIQPYQ PLGSPTVRWW IIAGLFILWF
LRLLLRWWRA QRMNEHLMTG LARLTSPREA DGTPAAGSEE VAELESRFKE ALDTLSKTRF
GQTEGGLFGR WNKRYIYQLP WYLIIGSPGS GKTTALINSG LDFPLAAQFG KRAIPGIGGT
RNCDWWFTDQ AVLLDTAGRY TTQESDAEQD KAAWKGFMQL LKRFRGRQPV NGVIVTLSVQ
ELLSASDAER AQLAQLIGLR LSELCEELTI RFPVYVLVTK SDLLAGFNEF FGAMSREERA
QVWGFTYPYD EKTQRSPASD PQAASALYME EFDALVAQIN RLLPQRLMTE PDLARRSLLY
ALPQQFAGLK DVVRDTLDAA FSASRFKEKP LLRGVYFTSG TQEGMPFDRV MSALSRRFAL
RGRLPADAVP QQGRSYFLES LFKDVMFNES GLTGRNAKKE RQLRLMQAAG LCALLLALGG
AALAWTLSYE NNQRYLNEVA DNAGTLRQAV EESKATDPDN VVALVPMLNH AARVAQSSRF
EESAPLGWRW GLLQVPKVQT AAHATYLRLL EDAWLPRLSS HVARSLRQVS TGSPEASYET
LKAYLMLYEP DHFDATFVKA WLRSDWENTL PQHLVQAGLV DQLSEHLDRL IDGRVVVSAQ
PIDANLVAEV RQRLAQMSPA QRAYSRLKQL LNTGDKLPPD FSVVRASGPE APQVFARASG
KPLTQGISGL FTYDGYHGLF LHELPKVTTL LAKEETWVLG QAEGRRSVAQ EVLTGQLANE
VKRLYLMEYA RLWETFLADI RPIRTASLEQ AGEQARLYSS ANSSLEQFIR AVARETTLAR
RPDQQEGGGS GSTSSWLGEK LQRIREEQHQ LSRLTGKPLN VGGMLATGTL EADIVDFRFR
EYRRLATSNG SGPAPITASL QVLNEAAAVI ASARQQVIQG GGVPPSLSGT LEKVRSEAKR
VPPPLNSMYE ALATSTSSFV GSSVRSTLGG NLNATIGDFC RRAILGRYPF TRSATRDVTT
DDFARLFATG GTMDEFFRTQ LQTMVDISTV PWTFKQGVDG TPVGGSASLA AFQRAASIRD
VFFRAGGNTP GIRLEIKPLD MDASISQMVL DVDGEIVRYQ HGPQIPKAVS WPGTRGTGQA
RLQITAAGAQ NTGIVTEGPW ALHRLFDRAQ ILPGNSPERF TAIFTIDGRK LRMEVTTSSV
LNPFRLKAME EFECPDRL
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