| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3845 |
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| Symbol | |
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| ID | 5749428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4237714 |
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| End bp | 4239045 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641298943 |
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| Product | hypothetical protein |
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| Protein accession | YP_001564861 |
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| Protein GI | 160899279 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00641884 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.766287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGTT CCAACATCAG CCACCAAATG CCCTGGGGCG GCGACGCCGA CACGGGCCGT
GCCGAAGGCG CGGCCAGCGC CGCGCCCGCG CCTGCCGGCC AGGAGCCGCT GCGCTCCAAC
CTGCCCGACG TGGTCAGCGG CGGCAACCCG CTGGTGGCCG CCGCCAACCG GCTGCTGAAC
CTCATCCCCC AGATCCGCGC CATGGTCACC AACGAGGACC CGCGCGCGCT GCAACAACTG
CTGCTCGAGC ACATCCGCGA ATTCGAGCAG CGCGCAGGCG CCAGCGGCGT GCCCATGGAA
ACCATCATCG GTGCACGCTA CTGCATCTGC ACGGTGCTGG ACGAAACCGC CGCCCAGACG
CCCTGGGGCA GTGCCGGCGT CTGGCCCAAG CACAGCCTGC TGGTCGCCCT GCACAACGAA
ACCTGGGGCG GCGAGAAGTT CTTTCAGCTG CTGGCCCGCC TGGTGCAGAC GCCGCACCAG
CACATCGACC TGATCGAGCT GCTGTACTAC TGCGTGATGC TGGGCTTTGA AGGCCGCTAC
CGCGTGATCG ACAACGGCCG CGCCCAGCTG GAGACGCTGA AGGCGCGCCT GCTGCAGCTC
ATCGAATCGA CGCGCGGCGA CCGCAGCAGC CTGCTGTCCG TGCACTGGCG TGGCGTGCAG
CGCCTGGCCT CGCCGCCCTG GGCCATGGTG CCGCTGTGGG TGGCGGCTGC AATCACCTTG
CTGCTGGCGT TCTTCATCTA CCTGTGGTTC AGCTACCGGC TGTCCAACAG TTCGGACGAC
CTGTTCGCCG CCATCAACGA GATCCGCTTC CCGCGCACCT CGGCGGCCGC CACCGTCGCC
ACGCTCAAGC CGCGGCTGCG CCAGTTCCTG GAGCCCGAGA TCCGCGAAGG CCTGGTCAGC
GTGCGCGACG AGGCCGACCG CAGCACCGTG ATCCTGCGCG GCGACGGCCT GTTCGACCCG
GCCGCCACCG TCGTGAAGCC CCGCTACGTG CAGGTCATCC ACCGCGTGGC AGCGGCCCTG
GACGAAGTGC CGGGCAAGGT CGTCGTCAAC GGCTACACCG ACAACCTGCC CATACGCACG
GCGCGCTTCC CGTCCAACTG GAACCTGTCG CAGGAACGTG CCCAGGCCGT GTCCCAGATG
CTGGGCGGCT CGCTGCGCGA CCGCCAGCGC CTGCATGCCG AGGGCCGTGC CGACAGCGAC
CCCGTCGCCC CCAACAACAC GGCAGAAGGC CGGGCGCTGA ACCGGCGGGT GGAAATCGTC
CTGCTGGTCG CGCCCCAGCA ACGTGACCAG CAACTGCAGG CCCTGCCTGC CGCACCCGAG
ACCAGGAACT GA
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| Protein sequence | MNSSNISHQM PWGGDADTGR AEGAASAAPA PAGQEPLRSN LPDVVSGGNP LVAAANRLLN
LIPQIRAMVT NEDPRALQQL LLEHIREFEQ RAGASGVPME TIIGARYCIC TVLDETAAQT
PWGSAGVWPK HSLLVALHNE TWGGEKFFQL LARLVQTPHQ HIDLIELLYY CVMLGFEGRY
RVIDNGRAQL ETLKARLLQL IESTRGDRSS LLSVHWRGVQ RLASPPWAMV PLWVAAAITL
LLAFFIYLWF SYRLSNSSDD LFAAINEIRF PRTSAAATVA TLKPRLRQFL EPEIREGLVS
VRDEADRSTV ILRGDGLFDP AATVVKPRYV QVIHRVAAAL DEVPGKVVVN GYTDNLPIRT
ARFPSNWNLS QERAQAVSQM LGGSLRDRQR LHAEGRADSD PVAPNNTAEG RALNRRVEIV
LLVAPQQRDQ QLQALPAAPE TRN
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