| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3824 |
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| Symbol | |
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| ID | 5749407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 4211368 |
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| End bp | 4214001 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641298922 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001564840 |
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| Protein GI | 160899258 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.668765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.248455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTG TCGCAGGCAG ATCCGGCCCT TGGCTGCCCG GCGCACGCTA CGGAAACCTC
TGCATGCCCG CCTTCAGGCT CTCACTTCGC ACGGCAGTCA CAGCCCCCTT CATAGCGGTG
TTCGTGGTCA CGGCCGGGCT ATTGGCGGCA TGGCAGCAGC GCCAGGTGGA CCAACTCATC
AACCGCGAAA GCCTGCGGCT GCTCGACTCC CTGTCCACCA CCACGCGCCA CCAATTGGCC
GATTACCTGG AGACCCCGCT GCGCGTGCAG CAGGCCCTGG CCGAGACCGT GGCCCGGCAG
GCGCTCTACA CCCCCGGCGA CCTGCGCCCC ATCTATGACT ATCTGACACG CTCATTCACC
GAGCTGTATG CCCAGCACCA CCAGATCAGC CTGTTGAGCT TTGGCGGCGT ACAAGGTGAA
TACACGGGCG TGCGGCTGGA GCCCGATGGC CGCTACCGCC TGATTCTTCA GGACCGCAGC
ACCCAGGGCG CCCTGCAGAT CTTCGAGGGG CTGGAGCCCG GCCCGCCCAT GTCCAGCCTT
GCCGGCTACG ACCCCCGCGT GCGCCCCTGG TACCAGCCTG CCATCCACAA AGACGGCCCG
CACTGGTCGC CCATCTACAC GGTGACTGGC GACCGGGGCG ACACCACGAT TTCCGCATCC
ACGTCCGTGC GGGTGTCCGG CCAGCTGGCC GGCGTGGTGG CCGCCGATGT GCGGCTGAGC
AGCATGAACC GCTTTCTGCG CGATGAGCCC TTGCGTGGCA ACGGCCATAT CGCCGTGGTC
GACGCACAGG GCTACATGGT GGCGCACTCG TCCGAGCTGT CGGTGCTGAA ACGGCGCGAA
GGCCCCTATG ACCCACCCGT GCGCCTGCGG CTGTCCGAAA GTCCCGATCT TGCGCTGCGC
AGCCTGGCCG CCCTGTTGCC TGCGCATCTG AGCGCGGATT CATCGGCGCC AGCGGGTCCC
GAGAAAACCA TCAACCTGAG CTTCAAGGAA CAGGGGCAGA TCTACCACGG CCAGGTCACC
GCATTCCACG ATGCACGCGG CATCGACTGG CGGATCCTGG TGCTGCAGCC CGAATCCGAT
CTGGTCAGCA GCATGCGGGC GGACAGCCGC CATGCGCTGG TCCTCGCTTT CGGCCTGGCC
TTGCTGGGAC TGGGGCTGGG CGTGTGGTGC CTGCGCCGGG CGCTGCGCCC CCTGGCGGTG
ACGGCCGATG CGGCCAACCG CCTGGCCAAG GGCGACTGGA GCGCGGTAGG GGCGCTGCCG
GATACGTCCC TGGTCGAGAC ATCGTCCCTG GTCTCGGCCT TCCACAACAT GGCGCAGCGG
CTGCAGGAAT CGTTCGAGCA CATGCGCACC CTGCTGCAGT ACGACAGCCT GACGCAGCTG
CTCACGCGCG CCGGCCTGAT CGAGCAGGCC GATGCGGCGG CAGCCGCCAA CACGCCCTGC
CCTGCCGCGC TGTGCCTGCT GGAGCTGCAG AATTTCCGCA GCGTCCGCGA CGATGTGGGC
CACGGCACGG GCGAGCAGTT GCTGCGGGCC GTGGCCGAGC GGCTGCGCAA CCACCATCTG
CAGTTTCCTG CCCTGCTGGC GCGCACGGCC AGCAACGAGT TCGCCATGCT GTGGCTGCAT
GACTGCACGC CGCAGCAGAT GCAGGACAAA TGCCGCCATC TGCTGGAAAT CTTCGACCAG
CCATTTTCCG TGGGCAAGGA CGACATCGTG CTGCGCGCCT GCGCGGGCGC CGTCAGCGGC
GAGCTGCTGC CGGGCGTGCT GCCCGAGTGG CTGCGCAACG CCAGCATTGC GCTGGGTGAG
GCGCAGCGCG GCTCGCACCC CTTCCTGCTG TTCGAGCCCA GCCTGGCGCA GAAAATGCTG
GGCCGCACGC AGCTGGCCAT GGAGCTGCGC CAGGCGGTGG AGCGCAACGA GCTGCGCGTG
TTCTACCAGC CCGTGGTGGA CCTGGCCACA GGCAGCATGG TCGGCGCCGA GGCCCTGGTG
CGCTGGAACA GCCCGACGCG CGGCATGGTG CCGCCCGGCG TCTTCATTCC GGTGGCCGAG
GAGTCGGACC TGATCCTGAG CGTGGGCGAA TGGGTGCTGC GCACGGCGGC GCACGACATC
GCCTCCCACC TGCCCCGGCT GCCCGCTGAC TTCGAGCTGC ACGTCAACAT GTCGGCACGC
GAGCTCATCC AGTCCGACTT CGCCTCCACG CTGGAGCAGG CACTGGCCAC CAGCGGCCTG
CCCGCCCGGC TGCTGACCCT GGAGCTGACG GAGTCCATGC TGCTGGACGA CAGCGACGCC
ACGCTGCAGC GCATTGCCGC CATCCGCGCG CTGGGCGTGA AGATCGCCAT TGACGACTTC
GGCACCGGCT ACTCCTCCCT GGCCTATCTC AGCCGCCTGC GCTTTGACTG CATCAAGATC
GACCAGAGCT TCGTCGGCCA GTTGCCGGAG TCCGAATCCG ACAAGTCCAT CGTGACCGCC
GTGCTGCGCA TCGCCCAGGG CTTCGGCGTC AAGGTCGTGG CCGAAGGCGT GGAGGAGCAG
GCCCAGGCCA AGCTGCTGCA TGCCCTGGGC TGCAAGCATG CACAGGGCTA TCTGTTCGAG
CGGCCGGTGC CGCTGGCGCA GATGCTGGAG TACCGCGCTC CCTGGCATGA GTGA
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| Protein sequence | MAAVAGRSGP WLPGARYGNL CMPAFRLSLR TAVTAPFIAV FVVTAGLLAA WQQRQVDQLI
NRESLRLLDS LSTTTRHQLA DYLETPLRVQ QALAETVARQ ALYTPGDLRP IYDYLTRSFT
ELYAQHHQIS LLSFGGVQGE YTGVRLEPDG RYRLILQDRS TQGALQIFEG LEPGPPMSSL
AGYDPRVRPW YQPAIHKDGP HWSPIYTVTG DRGDTTISAS TSVRVSGQLA GVVAADVRLS
SMNRFLRDEP LRGNGHIAVV DAQGYMVAHS SELSVLKRRE GPYDPPVRLR LSESPDLALR
SLAALLPAHL SADSSAPAGP EKTINLSFKE QGQIYHGQVT AFHDARGIDW RILVLQPESD
LVSSMRADSR HALVLAFGLA LLGLGLGVWC LRRALRPLAV TADAANRLAK GDWSAVGALP
DTSLVETSSL VSAFHNMAQR LQESFEHMRT LLQYDSLTQL LTRAGLIEQA DAAAAANTPC
PAALCLLELQ NFRSVRDDVG HGTGEQLLRA VAERLRNHHL QFPALLARTA SNEFAMLWLH
DCTPQQMQDK CRHLLEIFDQ PFSVGKDDIV LRACAGAVSG ELLPGVLPEW LRNASIALGE
AQRGSHPFLL FEPSLAQKML GRTQLAMELR QAVERNELRV FYQPVVDLAT GSMVGAEALV
RWNSPTRGMV PPGVFIPVAE ESDLILSVGE WVLRTAAHDI ASHLPRLPAD FELHVNMSAR
ELIQSDFAST LEQALATSGL PARLLTLELT ESMLLDDSDA TLQRIAAIRA LGVKIAIDDF
GTGYSSLAYL SRLRFDCIKI DQSFVGQLPE SESDKSIVTA VLRIAQGFGV KVVAEGVEEQ
AQAKLLHALG CKHAQGYLFE RPVPLAQMLE YRAPWHE
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