| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3751 |
|---|
| Symbol | |
|---|
| ID | 5749334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 4120094 |
|---|
| End bp | 4122037 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641298850 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001564768 |
|---|
| Protein GI | 160899186 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.28391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.673702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCC AAGACCCAGC CCGCGCCCCT TCCCTGGCCA TGAGCCTGCC AGCCGATGCC
AGCATGGCCA CGGCCTCCAC CCTGGTGGAA ATGCTGGCCC TGCGCGTGCA GCAGACGCCC
GCAGGCGAGG CCTACCGGGC CTATGACGAG GATGTGCGCA GCTGGAAGAC CCTGAACTGG
GCACAGGCCG GCGAGCGCGT GGCCCTCTGG GCGCAGGCGC TCGCCGCGCA GCAGCTGCCG
GCAGGATCGC GCATCGCCAT CCTGCTGCCC AACGGACTGG ACGCCATGTC CATCGACCTG
GCCAGCCTGC GCTGCGGCCA TGTGCCCGTG CCGCTGCACG CCATAGACAA CGCGGGCAGC
ATTGCCTACA TCCTGGCCAA TGCCCAGGTG TCCATGCTGT TCGTGGCACA GCAATCCACT
TGGGACAAGA TCTGCGCCAC AGGCCAGGCC CTGCCCGCGC TACGCAAGGT GGTCGTGGCG
TCGGCCAAGC CGGCTTCCCG CGCCGCAGAG CCTGAAACCG AAGGCGATGC CGCCGTCCTG
GAGGCACTTC GCCAGATCCC CGTGCAGCCG CTGGCCCCAT GGCTCGCTGA AGGCGGCGCA
GTCCCTCTGC CCCCGCCTCC CTCTGCCGAG GACCTGGCTG CCGTGGTCTA CACCTCGGGC
ACCACGGGCA AGCCCAAGGG CGTGATGCTC ACGCACCGCA ACGTGGTCTC CAACGTGCAG
GCCGTGATGC AGCGGCTGCA GCCTCGCAGC GACGATGTTT TCCTCTCCTT CCTGCCGCTG
TCGCACACCT TCGAGCGCAC GGCTGGCTAC TACCTGGCGC TGGCCGTGGG CGCCTGCGTG
GCCTATGCGC GCTCGGTGGC CCAGCTGGCC GAGGATCTCA AGACCCAGCG CCCCACGGTG
CTGGTGTCCG TGCCACGCAT CTACGAGCGC GTGCACGCCA AGGTCATGGA GACGCTGGCC
CGTGCACCGC TCAAGGCCCA GCTGTTCGAG CTGGCCCAGG CCAGGGGCTG GCAGCGATTT
TGTGAAACAC AAGGCATTGC CGATGCGCAA GCGCCCCAGC CCGAAGTGCC GGGCTGGATG
CAATGGCTGC CCTGGCCGGT GCTCAACCAC CTGGTGGCCA AGCCGCTGCT GGCCCAGTTC
GGTGGCCGCG TGCGCGTGGC CGTCAGTGGC GGCGCGCCGC TGTCGCCGAC GATTGCGCGC
TGTTTTCTGG GCCTGGGCCT GCCGCTGATC CAGGGCTATG GAATGACGGA AACCTCACCC
GTGGTCTGTG CCAACACGCT GGAGGACAAC CACCCCGCCA CCGTGGGCCA CGCCCTGCCC
GGCGTGGAGG TGCGGATTGG CGAGAACCGG GAACTGCAGG TGCGTGGCCC CTGCGTGATG
CGCGGCTATT GGGAGCGCCC CGAAGACACC GCCAAGACCT TCACCGACGA CGGCTGGCTG
CGCACGGGCG ACCAGGCGGT GATCGAGGAC GGGCGCGTGC GCATACAGGG ACGCATCAAG
GAAATCATCG TCACCTCCAC CGGCGAGAAG ATTCCACCGG CCGACCTGGA GCTGGCCATT
ACCGGCGACC CGTTCTTCAC CCAGGTCTTT GTCGTGGGCG AAGACCGCCC TTTCATCGCC
GCCGTGGCCG TCATCGAGCG CGGCGAATGG CAGACCATGG CCCGGCGCCT GGGCCTGGAT
CCCGAAGACC CCAAGAGCCT GAACCACTCC GCCGCCGAAC GCGAGGCACT GGCACGCATC
GAAAAGCAGG TGGCCAGCTT TGCCCGCTAT GCCGTGCCAC GCGCCGTGCA TCTGGAGCTG
GAGCCCTGGA CCATAGAAAA CGGGCTGATG ACGCCTACCC TCAAGCTCAA GCGCAACAAC
CTCATGACGC GGTTCGAGTC GCAGATCGCC GCCATGTACA GCAAGCCTGC CGAGCGCTGG
CAAGGCCGCA ACAGCGCGGG TTGA
|
|---|
| Protein sequence | MSIQDPARAP SLAMSLPADA SMATASTLVE MLALRVQQTP AGEAYRAYDE DVRSWKTLNW
AQAGERVALW AQALAAQQLP AGSRIAILLP NGLDAMSIDL ASLRCGHVPV PLHAIDNAGS
IAYILANAQV SMLFVAQQST WDKICATGQA LPALRKVVVA SAKPASRAAE PETEGDAAVL
EALRQIPVQP LAPWLAEGGA VPLPPPPSAE DLAAVVYTSG TTGKPKGVML THRNVVSNVQ
AVMQRLQPRS DDVFLSFLPL SHTFERTAGY YLALAVGACV AYARSVAQLA EDLKTQRPTV
LVSVPRIYER VHAKVMETLA RAPLKAQLFE LAQARGWQRF CETQGIADAQ APQPEVPGWM
QWLPWPVLNH LVAKPLLAQF GGRVRVAVSG GAPLSPTIAR CFLGLGLPLI QGYGMTETSP
VVCANTLEDN HPATVGHALP GVEVRIGENR ELQVRGPCVM RGYWERPEDT AKTFTDDGWL
RTGDQAVIED GRVRIQGRIK EIIVTSTGEK IPPADLELAI TGDPFFTQVF VVGEDRPFIA
AVAVIERGEW QTMARRLGLD PEDPKSLNHS AAEREALARI EKQVASFARY AVPRAVHLEL
EPWTIENGLM TPTLKLKRNN LMTRFESQIA AMYSKPAERW QGRNSAG
|
|---|
| |