| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3744 |
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| Symbol | |
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| ID | 5749327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 4113744 |
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| End bp | 4115219 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641298843 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001564761 |
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| Protein GI | 160899179 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00975176 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.397095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAT CCTTTGTTTC CGTGTCCGCC GCGCCCCGCC GCGTGGCCGC CGCAGCGGCC
ACCCTGTGCG CCGCGCTGGC CCTGGCCGGT TGTGCTTCCC AGGGCCCGGC CCATGAGCCG
CTGGCCCGGC TGGGCGCCTC CGACCTGGGT CTGACGGCCC AGTCCGAGAC AGGCTCCAAT
ACCAGCCTGC CCGCCGCCGA TTGGTGGAAG TCCCTGGGCG ATGCCCAGCT GGATGCGCTG
ATCGCCCAGG CGCTGCAGGG CAGCCCCAGC CTGGCCATGA GCCGCGCCCG CTTCGACAAG
GCTGCCGCCC TGGCCACGGC CACCAGCACG GCCACCGATG TGCGCGGCAC GCTCGGCGTC
GACGCCACGC GCCAGCACTA CAGCGCCAAC GGTCTGGTGC CCGCACCCAT TGCCGGCCAT
ACCTACAACA CCGGCAACCT GCAGGCCGGC CTGAGCTGGA CGCCGGATTT CTTTGGCCGC
CATGCCGCCG ACCTGCAGGC CGCCCTGGGC CAGGCCCGTG CCGCCCAGGC CGACAGCGCC
GCCGCCGCCA ACCAGCTGGC GGCCCAGGTG GCGCGCAGCT ATGTGGCGCT GGCTCGCCTG
ATTGCCCAAA AGGATGTGGC TGGCCGCACG CTGACCCAGC GCCAGTCTCT GCTGGACCTG
AGCCAGCAGC GCACGCGCGC CGGGCTGGAC AGCCAGGTGG AGCTGACCCA GGCCCAGGCC
GGCCTGCCCG ACGCCGGCAC CCAGATCGAA ATGCTGGACG AGCAGATCAC GCTGGCGCGC
CGCACCATCG CCGTGCTCTG CGGGCAGGCG CCCGAGGCGC AGCTGCAGCT GTCGCCCCGC
CTGGCAGCAC TGCAGATCCA GGCCGTGCCC GGCCAGTTGG GTGCCGATCT GCTGGGCCGC
CGCCCCGATG TGGTGGCCGC GCGCTGGCGC GTGGAGTCCG CAACGCAAGG CATAGAGAGC
GCGCGGGCGG ATTTCTACCC CGATATCAAT CTCACGGCCT TCATCGGCCT CAATGCCATC
GGCCTGGACA ACCTGTTCAA GGGCAGCTCG CGCCAGATGG GCATCACGCC CGCGCTGCGC
CTGCCCCTGT TCGACGGCAA GCGCCTGCGC GCCCAGTTGC GCGGCACGCA GGCCGACCTG
GACACCGCCA TTGCCCAGTA CAACGGCGTG GTGCTCGATG CGGTCAAGGA AGCGGGCGAC
GCCATCACTT CCGTGCAATC GCTGGTGCGC CAACAGCAGC TGCAGGCCGA GTCGCTGGAG
AAGGCCGAAC GCGCCTACGA CTTTGCCGTG CAGCGCTACA AGGCCGGCCT GGCCAGCCAG
GTGACGGTGC TGAACACCGA AACCCAGGTG ATCACCCAGC GCCGCCTGGA CGTGGACCTG
CGCGCCCGTG CGCTGGACAC GCGCGTGTCG CTGATGAAGG CGCTGGGCGG CGGCTGGACC
GATGGCACGG CTGCCGTGCA GGTCAGCCAG CACTGA
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| Protein sequence | MPKSFVSVSA APRRVAAAAA TLCAALALAG CASQGPAHEP LARLGASDLG LTAQSETGSN
TSLPAADWWK SLGDAQLDAL IAQALQGSPS LAMSRARFDK AAALATATST ATDVRGTLGV
DATRQHYSAN GLVPAPIAGH TYNTGNLQAG LSWTPDFFGR HAADLQAALG QARAAQADSA
AAANQLAAQV ARSYVALARL IAQKDVAGRT LTQRQSLLDL SQQRTRAGLD SQVELTQAQA
GLPDAGTQIE MLDEQITLAR RTIAVLCGQA PEAQLQLSPR LAALQIQAVP GQLGADLLGR
RPDVVAARWR VESATQGIES ARADFYPDIN LTAFIGLNAI GLDNLFKGSS RQMGITPALR
LPLFDGKRLR AQLRGTQADL DTAIAQYNGV VLDAVKEAGD AITSVQSLVR QQQLQAESLE
KAERAYDFAV QRYKAGLASQ VTVLNTETQV ITQRRLDVDL RARALDTRVS LMKALGGGWT
DGTAAVQVSQ H
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