| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3720 |
|---|
| Symbol | |
|---|
| ID | 5749303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 4086686 |
|---|
| End bp | 4090591 |
|---|
| Gene Length | 3906 bp |
|---|
| Protein Length | 1301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641298819 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001564737 |
|---|
| Protein GI | 160899155 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.148361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000379992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGCCTACGG AATATAGATC AGGCCACCCT TCCAGCATCA GCATCCTGCT GCCCGACGCC
AGTTCAGTGC TATTTCTGAA AGAGCCTGGC GAGCAATCTC CATGGCATGC CGCCACTGGG
CCTGATTTGT TATTGGGTTC GGTGGGAGGA AGTTGGAAAT ACTATCGCGC CAGCGACGAC
AGTTGGTGGA ACTTCGACAG TCAGGGTTGG CTGACTAACG TCACTTTGCG CAATGGCTGG
TATTACAACA TATTGCAAAA TAACGGCAAG GTTCTGTCTG TGACAAATTC CTTCGGTCGA
CAGGTGGATT TTGGTTACCG GGCAGATGGC AAGCTAAATT CCGTTGCATT GCCTGACGGC
AATACAGTGA GCTATGACTA CGACGCGAAG GGAAATCTCA GTTCCGTCAA GGTCAATGGC
TTTCAGACTC GAACATACAG CTACGAAAGT AGTGTTTCTC CGGGCCTCTT GACTGCCATT
GGCGATTCCC AGGGTAATCA AGTGCTGGGA TTTGTTTATA ACTCCGATGG CTCGCTCAAA
CACACATCAA GGGCTGGGGT AAGCGGTGTC TACAGCGTCT CTTATTCAGG CGCTGCCAGT
GTAGGAACGG CAGGCATGCT GGTGGCCCCC GGCGCTGATG ATCCCAACTG GTACAAAGCC
TCGGTCACCA CGACAGCCCC GGATGGCAAC GGCGCCACGC GCCACTACCA AGGATCGGCT
GCCGGCGTGC GCTTGGTCGG GCAGAGCAAG GCCACTTTCT GGGCAAAGTT CAAGGAGGAG
TTGAATGCTG ATCTTCTTCC AGCCTATATC GAAGACTTTA AAGGGAACAG AACTTCCTAC
CAGTGGAATG CCAATCGCCA ATTGATCACC AAGGTCGTGG CTGCTTTCAA TCGCACGGAG
GCCCAAAGCA CTCAAATTGA TTGGCATGAC ACCCTGGCCT TGCCCACTCT TATCACGGAG
ACCGGCCGCA CGACCAAGCT CAGCTACGGC GGTGGCGGCA GACTGGTGGG CGCCGCCCTT
ACGGACAACG CCAGCAATAC CACCTACTCA AGCGCTTGGA GCTACAACGC CCAGGGCCTG
CCCGAGACCT ATACCGATGC TGCCGGCCAG ACCCTGTTTG GCTATGACAC CCGGGGCAAC
CGCAACAAGG TCACCAACGC CCTGGGACAT GTCCACCAGT TCGCCCATGA TGGCGCGGGC
CGGATCCTGA CGGCCATGGC CCCTTCGGGC CTGGAGCGCA GCTACAGCTA CAACCCCCGG
GGGCAGCTCA CGCGCGTCAG CGTCGGCGGG CAGCAAACCA CGTTGACCTA CCTGCCCAAT
GACAGGCTGG GCACGATCAC CTTCGCCAAC GGCCATGCCA TCACCTACCA ATATGACGAC
GCCCGGCGCA TCAATCGCTG GAGCGACAAC CGTGGCAACT CCGGCCAGTA CGTTCTGGAC
CAGTGGGACA ACCGCACCAG TGAGCTCATC AAGGACAGCG CGGCCCAGAC AGCCCTGCAG
ATGCAGCGCT CCATCAACGG CATCAATCGC ATCAGCAGCG AAACCATACG CGGCAACCAA
AGTACTGCTT TGACCTATGA CGCCAACGGC GATCTGGCCA CGGCCAGCAA CGGCCTGGGG
CAGACCACCA CGCTGGACGT CGATGGTCTG CGCCGCCTCA CCAAAATCAC CGACCCTCTC
AACGCAAGCG CCACACTCAG CTACAACGCC CTGGACGCCG TCACCGCCGC CCAGGACTTC
AAAGGCGTCA CCACCACCTA CACCCGCGAC GCCCTGGGCA ACGCCAAGGC CGAAACCACC
CCCGACGCTG GCAACAGCAC CACCACCTAC GACGCCCTGG GCCTGATCGC GACCGCCAAG
GACGCCGCAG GCCGCACCCT CGCCGTGCAG CGCGATGCCC TGGGCCGCCC CATCCAGCTC
CAGTACGGCA GCACCGCAAC CTCCACGCTG CGCTACGACC TGCCCGGCAC CACCTACAAC
GGCCCCGGCG CCCCCAAGGC CAGCACGGGC CACCTCAGCG AGATCCAGGA CCCCGGCGTC
ACCACCCAGT ACCAGCGCGA CATCCTGGGC CGGGTGCTGC GCAAGAGCCA GATCCTTGCC
AATGGCGACA CCAAGTCGCT GATCCACTCG TATGTACCTG CTGGGCAGGG CGGAGGCGGA
GAACTGCAAA GCATCACCTA CCCCAGCGGC AAGCAGGCCA CCTACCTGTA TGACAGCACA
GGCCAGATCA CGGGCCTGCA GTGGAACGGC CAGCCCCTGG TCACCGGCCT GGCCTGGAGC
CCGCTGGGAC AGCCCACGGC CTGGCAATGG CAGGGCTTTG TGCAGCAGCC CGGCGCCACG
GCAGTCCTGG CCGAGCAGCG CAGCTACAAC ACGGCAGGCC AACTGGCCAG CAGCCAGTTG
CTGAACCTGA CCTGGGATGC TGCAGGCCGC ATCAGCCTGA TCCAGCAGCG GCACATGCTG
CCGGGTACGG CCGCAGCCCA GCAGGCCAAG CTGTCCAGCG CCTTCAGCTA CGACGCCGTG
GGCCGTCTCA CGGCCAGCGC GCACAGCGCG CCTTCGGGCC TCACCCTGCC CACGGGCTGG
AGCCTGGCCG ACACCATCGA GCTCAGCGCC TCCGGCTACG CGTGGGACGC CAACGGCAAC
CGCACCCAGG TGCACTACAG CAATGCCCTG GCATCGGGCA CGTCCACGCT GCAGCGCAAC
TACCAGACGG CTGCGGGCAC CAACCGCCTG CAAAGCTATG CCCAGACGCT GCAGCGCCCG
GGCAGCGCGG CGCAGAACAG CAACGTGACC TTCAGCTACG ACGCTGCGGG CGCCCTGGTC
AAGAAGGGCG ACAACCACCT GCACTACGGC GCGGACGGCC GCATCGCCAA GGCCGGCGAA
TACGCGGACG CGGCCGACGC ACGAGCGGTC AGCTACGTCT ACAACGCCCT GGGCCAGCGC
GTGCTCAAGA GCGATGCCCG GGGCGCAGGT CAACCGGCCA CGCTGCAGAC CCTGTACGCC
GAAGACGGCA TAGGCAGCAC CGTGCTGGGC CAGTACGCCA ACCAGCGGAG CGCCAATAGT
GCAGCGCCCG CAGGCCAGAG CGACAGCACG GAAATCATCT ACCTGCCCAC GGCCAGCGGC
CCCATGCCCA TTGCGGCAGA GATCAACGGC CGGCTGTACG CCATCCACAC GGACCACCTG
AACACCCCCA GGCGCCTGAC CAACCAGCAG GGGCAGGTGG CCTGGCAATG GCTGATCTCG
GGGTTTGGAG AAGTGCGTCC CACCACGGGC GACCGTGGCT ACGGCCAGAC GGTCAGCGGC
CCTAGCTATG CGCAGGCGGT GAAGTTCGAC CTGCGGTATC CGGGTCAGGT GTTTGATGAA
GAGACGGGGC TGTCGTACAA CCTGCACAGG TACTACGATG CGGCGACGGG GAGATACATC
CAGGCGGATC CGATCGGGCT GGCTGGAGGA TGGAATCGGT TTGGGTATGT GGGCGAGAAT
CCGTTATCGT TTGTCGATCC GTTGGGATTA GAAAAGGTGA TCCTGATTCC GACGAGAGAG
GGATGGACTT TTGCGGCAGC ATTAACCTAC CCGGACAACG ACGGTCTGTT AACCATCATC
TCGCACGGCT CGACAACGTC AGTCAATATG AAAAGCCCTG CTCAACTGGC TGATCTGATC
AAGACTTTAC CAAGTTGGAA GGCCGGTGAT CATCGCCCAG TTCTTTTAAA TGCCTGCAAC
ACAGGTGTTG GCGGTGATGA TTCTTATGCC GCAAAACTTT CCAAGTTATT GGGAGTGCCA
GTGACAGCGC CAACCACTCA AACTTGGAAC ATAGGTCCAA TTGATATCGG GCCATTTAAT
GCGAACTCTG CTGGCGATGC GCCGAATTTG TTTAAACGCG GATCTTGGGT AACTTTCAAA
AAGTAA
|
|---|
| Protein sequence | MPTEYRSGHP SSISILLPDA SSVLFLKEPG EQSPWHAATG PDLLLGSVGG SWKYYRASDD
SWWNFDSQGW LTNVTLRNGW YYNILQNNGK VLSVTNSFGR QVDFGYRADG KLNSVALPDG
NTVSYDYDAK GNLSSVKVNG FQTRTYSYES SVSPGLLTAI GDSQGNQVLG FVYNSDGSLK
HTSRAGVSGV YSVSYSGAAS VGTAGMLVAP GADDPNWYKA SVTTTAPDGN GATRHYQGSA
AGVRLVGQSK ATFWAKFKEE LNADLLPAYI EDFKGNRTSY QWNANRQLIT KVVAAFNRTE
AQSTQIDWHD TLALPTLITE TGRTTKLSYG GGGRLVGAAL TDNASNTTYS SAWSYNAQGL
PETYTDAAGQ TLFGYDTRGN RNKVTNALGH VHQFAHDGAG RILTAMAPSG LERSYSYNPR
GQLTRVSVGG QQTTLTYLPN DRLGTITFAN GHAITYQYDD ARRINRWSDN RGNSGQYVLD
QWDNRTSELI KDSAAQTALQ MQRSINGINR ISSETIRGNQ STALTYDANG DLATASNGLG
QTTTLDVDGL RRLTKITDPL NASATLSYNA LDAVTAAQDF KGVTTTYTRD ALGNAKAETT
PDAGNSTTTY DALGLIATAK DAAGRTLAVQ RDALGRPIQL QYGSTATSTL RYDLPGTTYN
GPGAPKASTG HLSEIQDPGV TTQYQRDILG RVLRKSQILA NGDTKSLIHS YVPAGQGGGG
ELQSITYPSG KQATYLYDST GQITGLQWNG QPLVTGLAWS PLGQPTAWQW QGFVQQPGAT
AVLAEQRSYN TAGQLASSQL LNLTWDAAGR ISLIQQRHML PGTAAAQQAK LSSAFSYDAV
GRLTASAHSA PSGLTLPTGW SLADTIELSA SGYAWDANGN RTQVHYSNAL ASGTSTLQRN
YQTAAGTNRL QSYAQTLQRP GSAAQNSNVT FSYDAAGALV KKGDNHLHYG ADGRIAKAGE
YADAADARAV SYVYNALGQR VLKSDARGAG QPATLQTLYA EDGIGSTVLG QYANQRSANS
AAPAGQSDST EIIYLPTASG PMPIAAEING RLYAIHTDHL NTPRRLTNQQ GQVAWQWLIS
GFGEVRPTTG DRGYGQTVSG PSYAQAVKFD LRYPGQVFDE ETGLSYNLHR YYDAATGRYI
QADPIGLAGG WNRFGYVGEN PLSFVDPLGL EKVILIPTRE GWTFAAALTY PDNDGLLTII
SHGSTTSVNM KSPAQLADLI KTLPSWKAGD HRPVLLNACN TGVGGDDSYA AKLSKLLGVP
VTAPTTQTWN IGPIDIGPFN ANSAGDAPNL FKRGSWVTFK K
|
|---|
| |