| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3621 |
|---|
| Symbol | |
|---|
| ID | 5749205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | - |
|---|
| Start bp | 3984761 |
|---|
| End bp | 3985771 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641298722 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001564640 |
|---|
| Protein GI | 160899058 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00174952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0743499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAACG TAGAAAATCA AGCACCTGCC AGCATGTGGC GCATGTCCGT GGCGCCCATG
ATGGACTGGA CCGACAAACA CTGCCGCTAC CTGCACCGCC TGCTGAGCCG TCACACCTTG
CTCTACACAG AGATGGTGAC GACGGGCGCT CTGCTGCACG GGGATGTGCC GCGGCATCTG
CGTTTCGAGG CCGAGGAACA CCCGGTGGCG CTGCAACTCG GCGGCAGCGA GCCTTCCGAT
CTGGCGCAGG CCGCGCGGCT GGGGGCGCAA TGGGGATATG ACGAGATCAA CCTCAATTGC
GGCTGCCCCA GCGAGCGCGT GCAGCGCGGC GCATTTGGCG CCTGCCTGAT GAACGAGGCG
CCGTTGGTGG CCGATTGCGT GAAGGCGATG GTGGATGTGG TGGATGTGCC CGTCACGGTG
AAGCACCGCA TTGGCATCGA CAAGGATGAG AGCTACGAGT TCGTGCGCGA TTTCGTGGGC
ACGGTGGCGG ATGCGGGCTG CCGCGTGTTC ATCGTGCATG CCCGCAATGC CTGGCTCAAG
GGCCTGTCAC CCAAGGAAAA CCGCGAGATC CCGCCGCTGC GCTACGAGAT CGTGGCCCGG
CTCAAGCAGG ATTTTCCGGA ACTGACCATT GCCATCAACG GCGGCATCAA GGCCGATGCC
ACGGTGCAGG ACCTGCTGCA GCAGGTCGAT GGCGTGATGG TGGGCCGCGA GGCCTATCAC
AACCCCTGGT GGCTGGCCTC GTGGGATGCG CTGTACTACG GCGATGCAAG CGTGGAGCAC
ACGCGCGAGT CCATCGAGGA GCAGATGGTG GCGTATATGG AGCGCGAGGC GCGCACGCAT
GGCACGCACT GGTACTCCAT CGCACGGCAT ATGTTGGGGT TGCGCAACGG GCTGGCGGGG
GCGCGCCGCT GGCGCCAGGT GTGGAGCAAT CACCAGCTCA AGCAATTGCC GCCTTCAGAG
GTGATGCGGC TTGCGCGCAC CAAACCGGCC GAGGCGGCGC TTGCCGCCTA G
|
|---|
| Protein sequence | MTNVENQAPA SMWRMSVAPM MDWTDKHCRY LHRLLSRHTL LYTEMVTTGA LLHGDVPRHL
RFEAEEHPVA LQLGGSEPSD LAQAARLGAQ WGYDEINLNC GCPSERVQRG AFGACLMNEA
PLVADCVKAM VDVVDVPVTV KHRIGIDKDE SYEFVRDFVG TVADAGCRVF IVHARNAWLK
GLSPKENREI PPLRYEIVAR LKQDFPELTI AINGGIKADA TVQDLLQQVD GVMVGREAYH
NPWWLASWDA LYYGDASVEH TRESIEEQMV AYMEREARTH GTHWYSIARH MLGLRNGLAG
ARRWRQVWSN HQLKQLPPSE VMRLARTKPA EAALAA
|
|---|
| |