| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_3592 |
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| Symbol | |
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| ID | 5749176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | + |
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| Start bp | 3947764 |
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| End bp | 3949875 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641298693 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001564611 |
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| Protein GI | 160899029 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0307521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0769861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA ATCTGGATCT TTTCTCCGGC GCAGCCCCCG CGGCGCCGGA GTCCGGGGCC
GCCCCCGACA AGGTGCTGGC CAAGGTGCAG GCGCTGCGCG CCCAGCTCAA CCAATGGGCG
CATGAGTACT ACGTGCTGGA CACGCCCACC GTGCCCGACG GCGAGTACGA CCGCGTCTTC
CAGCAACTGC AGGCGCTGGA AGGTGCCTAT CCCGAACTGG TCACGCCGGA CTCGCCCACG
CAGCGCGTGA TTGGCGCCGT GCTCGACGGC CTGATGCCCG TGCGCCATGC CGTGCCCATG
CTCAGCATCC GCACCGAGAC CGACAACGAG GCCACGGGTG CCGAGGCCTT CGACGCACGC
ATCCGCAAGG AGCTGGAACT GGCCGAAGGC GCGCCGCCCG TGGAGTACGT GGCCGAGCCC
AAGTTCGACG GCCTGGCCAT GAACCTGCGC TACGAGAACG GCCGCCTGGT GCAGGCCACC
ACGCGCGGCG ACGGCGAGGT GGGCGAGGAC GTCACGCACA ACATCCGCAC CATCCGCAAG
ATTCCGCTGT CCCTGCCCGA AGGCAAGGGC GTGCCGCCCG TGGTCGAGGT GCGCGGCGAG
GTCTACATGG GCCGCGCCGA CTTCGTCAAG CTCAACGAGC GCCAGCAGGC CGCCGGCGGC
AAGAGCTTTG CCAATCCGCG CAATGCGGCC GCAGGCTCGG TGCGCCAGCT GGACTCGGGC
ATTGCGGCCC AGCGCCCGCT GTCCTTCTTC GCCTATGGCC TGGGAGAGAT CACGCCGGCT
GCCCAGGGCG GCCCCGACTT CGTCACCCAC TACGCCATGC TGCAGACGCT GCGCGACTGG
GGCTTTCCGG TGGCGCCCCA GGTCTGCATC GCCAAGGGCG CAGCCGAGCT GGTGGCCTTC
CACCAGCGCA TGGGCGCCGA GCGCGCCACG CTGCCCTACG AGATCGACGG CGTGGTCTAC
AAGGTCAACA GCCTGGCCCA GCAGCGCCAG CTGGGCTTTG TCTCGCGCGA GCCGCGCTGG
GCCGTGGCCC ACAAGTACCC GGCCGAGGAA ATGCCCACGC GCATGGAAGG CATCGACATA
CAGGTCGGCC GCACGGGCAA GCTCACGCCC GTGGCGCGCC TGGCCCCCGT GGCGGTGGGC
GGCGTCATCG TCACGAATGC CACGCTGCAC AACCTGTTCG AGATCCGCAA AAAGCGCGTG
CGCACGGGCG ACACCGTGGT CGTGCGCCGC GCCGGTGACG TGATCCCCGA AGTCGTGGGC
CGCGTGCCCG GCGACCGGCC GGCCTATGTG CCCAACTTCC GCATGCCCGC TGCATGCCCC
ATCTGCGGCA GCGCCGTGGC GCGGCCCAAG GGCGAGGCCA ACCACCGCTG CACTGGCGGC
CTGTTCTGCC CGGCGCAGCG CAAGGAGGCC ATCCTGCACT TTGCCGCGCG GCGCGCCATG
GACATCGAGG GCCTGGGCGA CAAGCTCGTG GACCAGTTGG TGGACGGCCA CGTGGTGCGC
ACGCTGCCCG ATCTCTACCG CCTGGGCCTG GTGGCCCTGG CATCGCTGGA CCGCATGGCC
GAGAAGTCGG CCCAGAACGT GCTGGACGCG CTGGAAAAAT CCAAGAAGAC CACGCTGTCG
CGGTTCCTCT TCGGCCTGGG CATCCGCCAG GTGGGCGAGT CCACGGCCAA GGACCTGGCC
CGCCACTTCG GCCAGCTGGA CGCCATCATG GACGCCAGCG TCGAGCAACT GCTGCAGGTG
CGCGACGTGG GGCCCATCGT GGCCGAGAGC ATCCACACCT TCTTCGCCCA GCCCCATAAC
CGCGAGGTGG TCGAGCAACT GCGTGCCTGC GGCGTGCACT GGGAAGAGGG CGCGGCGCGC
GAGCAGACCG CCCAGCCGCT GGCCGGCATG ACCGTGGTGC TCACGGGAAC GCTGCCCACG
CTGGGCCGCG ACCAGGCCAA GGAGATGCTG GAGGCCGCGG GCGCCAAGGT CTCCGGCTCG
GTCAGCAAGA AGACCAGCTA TGTGGTGGCT GGCGCCGAGG CCGGCAGCAA GCTGGCCAAG
GCCGAGGAAC TGGGCGTGAC CGTGCTGGAC GAGGCCGGCA TGCTGGCGCT GCTGGCAGGC
GGGGACCGCT GA
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| Protein sequence | MNDNLDLFSG AAPAAPESGA APDKVLAKVQ ALRAQLNQWA HEYYVLDTPT VPDGEYDRVF
QQLQALEGAY PELVTPDSPT QRVIGAVLDG LMPVRHAVPM LSIRTETDNE ATGAEAFDAR
IRKELELAEG APPVEYVAEP KFDGLAMNLR YENGRLVQAT TRGDGEVGED VTHNIRTIRK
IPLSLPEGKG VPPVVEVRGE VYMGRADFVK LNERQQAAGG KSFANPRNAA AGSVRQLDSG
IAAQRPLSFF AYGLGEITPA AQGGPDFVTH YAMLQTLRDW GFPVAPQVCI AKGAAELVAF
HQRMGAERAT LPYEIDGVVY KVNSLAQQRQ LGFVSREPRW AVAHKYPAEE MPTRMEGIDI
QVGRTGKLTP VARLAPVAVG GVIVTNATLH NLFEIRKKRV RTGDTVVVRR AGDVIPEVVG
RVPGDRPAYV PNFRMPAACP ICGSAVARPK GEANHRCTGG LFCPAQRKEA ILHFAARRAM
DIEGLGDKLV DQLVDGHVVR TLPDLYRLGL VALASLDRMA EKSAQNVLDA LEKSKKTTLS
RFLFGLGIRQ VGESTAKDLA RHFGQLDAIM DASVEQLLQV RDVGPIVAES IHTFFAQPHN
REVVEQLRAC GVHWEEGAAR EQTAQPLAGM TVVLTGTLPT LGRDQAKEML EAAGAKVSGS
VSKKTSYVVA GAEAGSKLAK AEELGVTVLD EAGMLALLAG GDR
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