Gene Daci_3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3540 
Symbol 
ID5749125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3890700 
End bp3891131 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content65% 
IMG OID641298643 
ProductDNA polymerase III chi subunit HolC 
Protein accessionYP_001564561 
Protein GI160898979 
COG category[L] Replication, recombination and repair 
COG ID[COG2927] DNA polymerase III, chi subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0730184 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACTGAAG TGGCCTTCCA TTTCAACGCG CCCGACAAGC TGGCCTATGT CTGCCGCCTG 
GCGCGCAAGG CACTCAGGCA CCGCACGCAA CTGGTGGTGC TGGGGTCGCC ACCGCTGCTC
AAGGCCTTGT CGCCCAGGCT GTGGAGTGTC TCGCCCACCG ACTTCCTGGC CCATGCCGGA
GAAGGCGATG GGGCAGACAT CATGGCCTTC TCGCCCATCG TTTTGCTGGA GCGGCTGGAC
GGCGCGCCGC ACCACGACAT GCTGGTCAAC CTGGGCGGCG AAGTGCCCGA AGGGTTCGAG
CGCTTTGCGC GTGTCGTCGA AGTGGTTTCC GCCACCGACG AGGAAGACCG CCACCTGGCC
CGGCAGCGCT GGAAGCACTA TGCGGCCCAG GGTATTTCCA TCAAGCGCCA TGACCTGGTG
CTCAAGGAGT AA
 
Protein sequence
MTEVAFHFNA PDKLAYVCRL ARKALRHRTQ LVVLGSPPLL KALSPRLWSV SPTDFLAHAG 
EGDGADIMAF SPIVLLERLD GAPHHDMLVN LGGEVPEGFE RFARVVEVVS ATDEEDRHLA
RQRWKHYAAQ GISIKRHDLV LKE