Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_3478 |
Symbol | |
ID | 5749063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 3810630 |
End bp | 3812120 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641298581 |
Product | diguanylate cyclase |
Protein accession | YP_001564499 |
Protein GI | 160898917 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.289854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACATC GCGCCGCATC CGGAGATCCG TGGAGCCTTC CACAAGTTGC AACGCCCTGG CGGGACAGCT TTGTGCTGGG CGGGGTGCTG TTTCTGTGCT CGGCCGTGGC GCTGGGCCTT CGCTCTCCGG AGCATCTGTC GTCCCTGTGG CTGTCCAACG CCCTGCTGCT GGGCTGGATG CTTCGCAGCC CTGCCTACAG CCATAGACAC GGCTGGACGG CTGCCGCCAT TGCCATGGCG CTGGCCGAAT GGCTTTCTGG CAGTCCGCTG GACCAGACCC TGTGGCTGAC CTTTGCCGAC CTGGCCGCCG TGGCCTGCGG CTGGGTGATG ATGCGGCGCC TGCCGCAGCG GGTGCAGCAG ATGCGCTCCC CTTCCTCGGT GCTGCATCTG GTGATGTGCA GCCTGCTGGT GAGCGTGGTC GGAGCCGTGC TGGGCTCGGC AGGCATGCAC CATCTCATGC ATTGGCCCTG GCAGCCCATG ATGGCCATGT GGTTCAGCAG CGAGTTGATG CACATGACCC TGTTGCTGCC TGTGCTGCTG AGCCTTCCGG CAAAGCTGGA GCCGCTGTCC TGGCGCAGCC AGCCATTCAA ACAAACGGCG CAGGCCTTGC TGCCGCTGCT TGCCCTGGCG ATTTCCGAAT CCATTGCCAT CTACCTGGGC GGACCAGGCG CGCTGTCGCT CACCATGCCG GCCATGCTGC TGTGCGCCAT GCGCTATCGG CTGTTCGTGG TCGCCCTGCT CAACCTGGTC AGCTGCGCCA TCAAGCTGGC CACGTTTTCC CATGTGTTGT TCAGCTCGCC CGGCACCGAG CTGGAGACGA CGTTCTCCTT CCGCCTGGGT CTGGCCATGC TGTCGATCGG CCCGCTGGCC GTAGCCTGCA CGCTCATGGC TTTCAAGGAC ATGCTCAGCA AGCTGCGCCA TGCAGTGAAC CACGATGCGC TGACGGGACT GCTGGCACGC ACCAGCTTTC TGGAGCGCGC ACAGCGCACG CTGGAGCGCC TGCAGCGCGA GCGCCAGTCA GGCGCCATGC TGATGCTCGA CCTGGACCAC TTCAAGCACA TCAACGACCG CCATGGCCAT GCCGCCGGCG ACCGGGTGCT GCAGGAAGTC TCGGCCCGCC TGTCGCAGGC GCTGCGTCCG CATGAGCTCA TAGGCCGCCT GGGCGGCGAG GAGTTTGCGG TGCTGCTGCC CGGTGCCGAC TGCGTCACGG CCAGAGCCGT GGCCCAGCGG CTGTGCGAGG CCACGCGCGA AATTCGCATC GACATGAACG ATGGCGCAGC CATCTGCCCC ACTCTGAGCA TTGGCATAGG CTGCACGAAC ATGGCCTACC CACCGCTGGG TTTGAGTGCC TTGCTGCGCA TGGCCGATAC GGCGCTGTAC CAGGCCAAGG CCAGCGGCCG CGACCGCTAC TTCGTGGCCG GCGAGCGGCC GGGCGAGGCC GACTCACCGG CCTTTGCCTG CGAGCATTCC GGGGGCGCCA AAGCGGCCTG A
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Protein sequence | MSHRAASGDP WSLPQVATPW RDSFVLGGVL FLCSAVALGL RSPEHLSSLW LSNALLLGWM LRSPAYSHRH GWTAAAIAMA LAEWLSGSPL DQTLWLTFAD LAAVACGWVM MRRLPQRVQQ MRSPSSVLHL VMCSLLVSVV GAVLGSAGMH HLMHWPWQPM MAMWFSSELM HMTLLLPVLL SLPAKLEPLS WRSQPFKQTA QALLPLLALA ISESIAIYLG GPGALSLTMP AMLLCAMRYR LFVVALLNLV SCAIKLATFS HVLFSSPGTE LETTFSFRLG LAMLSIGPLA VACTLMAFKD MLSKLRHAVN HDALTGLLAR TSFLERAQRT LERLQRERQS GAMLMLDLDH FKHINDRHGH AAGDRVLQEV SARLSQALRP HELIGRLGGE EFAVLLPGAD CVTARAVAQR LCEATREIRI DMNDGAAICP TLSIGIGCTN MAYPPLGLSA LLRMADTALY QAKASGRDRY FVAGERPGEA DSPAFACEHS GGAKAA
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