Gene Daci_3174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3174 
Symbol 
ID5748758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3494688 
End bp3495497 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content67% 
IMG OID641298277 
ProductYaeC family lipoprotein 
Protein accessionYP_001564197 
Protein GI160898615 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen 
TIGRFAM ID[TIGR00363] lipoprotein, YaeC family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0987485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.00336429 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAAGC GCGCATTGCT TCAATCGCTG GCCCTGGCCG CCGTCCTGCC GCTGGCGGGA 
ATGGCCGCGC TGCCGGCCCA TGCGGCCGAC GGCTCGGTCA CCATCGGCGT GACCTCGGGC
CCGCATGCCC AGATCGCCGA GGTGGCCAGG AAGGTGGCCG AGAAGAACGG CCTGAAGGTG
AAGCTGGTCG AGTTCGGCGA CTTCATCCAG CCCAACGCTG CCCTGTCGCA GGGCGAGCTG
GACGCCAACA TCTACCAGCA CCAGCCCTTC ATGGACGCCC AGAACAAGGA CCGCGGCTAC
AAGCTCGTGC CCGTGGCCCG TGCGGTCAAC CAGCAGATGG GCGTGTACTC CAAGAAGATC
AAAAGCCTGG CCGACCTCAA GAGCGGTGCG CGCGTGGGCA TCCCCAACGA CCCCACCAAC
GGCTCGCGCG CACTGATGGT GCTGGCCGCG CAAAAGCTGA TCGAACTGAA GACCGGCGCG
GGCGCCCGTG CCTCGGTGCT GGATATCACG GCCAATCCGA AGAAGCTGAG GTTCGTCGAG
CTGGAGGCCG CCCAGCTGGC GCGCTCGCTG GACGATCTGG ACGCTGCCGC CGTCAACAGC
AGCTACGCCG TGGCCGCAGG CCTGTCGCCG CAAAAGGATT CGCTGGCGCT GGAAGCCACG
GACACGCCGT ACGTGACCGT GCTGATCGCC ACGCGCGCGG GCCATGAGAA GGACGCGGGC
CTGCAGGCCT TCGTCAAGGC CTACCAGTCG CCCGAGGTGC GCCAGTTCAT CGACACGCAG
TTCAAGGGCG CCTACACGGC GGCCTGGTAA
 
Protein sequence
MKKRALLQSL ALAAVLPLAG MAALPAHAAD GSVTIGVTSG PHAQIAEVAR KVAEKNGLKV 
KLVEFGDFIQ PNAALSQGEL DANIYQHQPF MDAQNKDRGY KLVPVARAVN QQMGVYSKKI
KSLADLKSGA RVGIPNDPTN GSRALMVLAA QKLIELKTGA GARASVLDIT ANPKKLRFVE
LEAAQLARSL DDLDAAAVNS SYAVAAGLSP QKDSLALEAT DTPYVTVLIA TRAGHEKDAG
LQAFVKAYQS PEVRQFIDTQ FKGAYTAAW