Gene Daci_3071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3071 
Symbol 
ID5748655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3383080 
End bp3383796 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content70% 
IMG OID641298174 
Producttwo component transcriptional regulator 
Protein accessionYP_001564094 
Protein GI160898512 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000985444 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCA CGCGCCGCGT ACTTCTCGTC GAGGACGACG CCCATATCGC CGACCTGCTC 
ACGCTGCACC TGCGCGACGA AGGCCTGGAA GTCATGCACT GCGCGCGTGG CGACGACGGC
CTGCGCCAAC TGGAGCGCGG CGGCTGGGAC GCGCTGGTGC TGGACATCAT GCTGCCCGGC
GTGGACGGCC TGGAGATCTG CCGCCGCGCC CGCGCCATGG CGCGCTACAC GCCCATCATC
ATCATCAGCG CGCGCTCCAG CGAGGTGCAG CGCATCCTGG GCCTGGAGAT CGGCGCCGAC
GACTACCTGG CCAAGCCGTT TTCCGTGCTG GAGCTGGTGG CGCGCGTCAA GGCGCTGCTG
CGCCGCGTGG AGGCGCTGGC CCAGAATGCA AGGCTGGAGT CCGGCAGCCT GACCATCGCC
GGCCTGGCCA TGGACCCCGT GGCGCGCGAT GCCCGGCTGC ATGGTGCCCG GCTGGACCTG
ACCCCGCGCG AGTTCGACCT GCTGTACTTC TTTGCGCGCC AGCCCGGCAA GGTGTTCTCG
CGCATGGACC TGCTCAACGC CGTCTGGGGC TACCAGCACG AAGGCTACGA GCACACCGTC
AACACCCACA TCAACCGCCT GCGCGCCAAG ATCGAGGCCG ACCCGGCCCA GCCCGCGCGC
ATCCTCACCG TCTGGGGGCG CGGATACAAG TTCGCCGAGG CGGGGGAGGG CGCCTGA
 
Protein sequence
MTATRRVLLV EDDAHIADLL TLHLRDEGLE VMHCARGDDG LRQLERGGWD ALVLDIMLPG 
VDGLEICRRA RAMARYTPII IISARSSEVQ RILGLEIGAD DYLAKPFSVL ELVARVKALL
RRVEALAQNA RLESGSLTIA GLAMDPVARD ARLHGARLDL TPREFDLLYF FARQPGKVFS
RMDLLNAVWG YQHEGYEHTV NTHINRLRAK IEADPAQPAR ILTVWGRGYK FAEAGEGA