| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2989 |
|---|
| Symbol | |
|---|
| ID | 5748573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 3292206 |
|---|
| End bp | 3293693 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641298092 |
|---|
| Product | NusA antitermination factor |
|---|
| Protein accession | YP_001564012 |
|---|
| Protein GI | 160898430 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.416264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCG AATTGTTGAT GTTGGTAGAA GCCATTTCGC GCGAAAAGAA CGTGGAGCGC
GATCTGGTGT TCGGTGCAGT GGAATCGGCC CTGGCCCAGG CCACCAAGAA GCTGTACCAA
GGTGAGGTGG ACATCCGCGT GGCCATCGAT CGCGATAGCG GTAACTACGA CACCTTCCGC
CGCTGGCTGG TGGTGCCCGA TGATGCGGGC CTGCAAAACC CCGATGCCGA AGAAATGCTG
ATGGACGCAC AGGACCGCGT CCCCGGTATC TCCGAAGGCG AGTACATCGA GGAAGAGATC
GAGTCGGTGC CCATCGGCCG CATCGGCGCC ATGGCGGCCA AGCAGGTCAT CCTGCAGAAG
ATCCGTGACG CCGAGCGCGA AATGCTGCTC AACGAGTTCC TGTCGCGCGG CGACCGGATC
TTCACGGGCA CCGTCAAGCG CATGGACAAG GGCGACATCA TCGTCGAGGC CGGCCGTGTC
GAAGGACGCC TGCGCCGCAA CGAGATGATC CCCAAGGAAA ACCTGCGCAA CGGCGACCGC
GTGCGGGCCA TGATCATGGA AGTGGACGCC ACGCTGCGCG GCGCGCCCAT CATCCTGTCG
CGCTCGGCGC CCGAGTTCAT GGTCGAGTTG TTCCGCAACG AAGTGCCCGA GATCGAGCAG
GGCCTGCTGG AGATCAAGAG CTGCGCTCGC GATTCCGGCA GCCGCGCCAA GATCGCCGTG
CTCAGCCATG ACAAGCGTGT CGATCCCATC GGCACCTGCG TCGGCGTGCG GGGCACCCGT
GTCAACGCCG TCACCAATGA ACTGGCTGGC GAGCGCGTGG ACATCGTGCT GTGGTCCGAA
GACCCTGCAC AGTTCGTGAT CGGCGCGCTG GCTCCGGCCA ATGTGTCGTC CATCGTTGTG
GACGAGGAAA AGCATGCCAT GGACGTGGTG GTTGACGAGG AAAACCTCGC CATCGCCATC
GGCCGTGGCG GTCAGAATGT TCGCCTGGCT TCCGAGCTCA CCGGCTGGAA GATCAACATC
ATGGACGCGG CTGAGTCTGC GCAAAAGCAG GCGGACGAGT CCGCCGTTGC GCGCCAGCTG
TTCATGGAAA AGCTCGATGT GGACGAGGAA ATCGCCAACA TCCTCATCGA GGAAGGTTTC
GAGACCCTGG AAGAAGTGGC CTATGTGCCG CTGCAGGAAA TGCTCGAAAT CGAGGCGTTC
GACGAAGAGA CGGTGAACGA GTTGCGCACC CGGGCGAAAG ATGCACTGCT GACGCAGGAA
ATCGCGCACG AGGAAAACGT GGGCAAAGTG TCGCAGGATC TGCTGACGCT CGAGGGAATG
ACTCCGGAGA TCGTGGACAA GCTGGCCGAG GCCGATGTGC ACACCCGAGA CGATCTGGCC
GATCTGGCCA TCGACGAGTT GACCGAGCTG ACCGGGCAGA CCGAGGAAGA AGCGAAGGCT
TTGATCATGA AGGCGCGTGA ACACTGGTTC ACCGAAGGGC AAGAGTAA
|
|---|
| Protein sequence | MNRELLMLVE AISREKNVER DLVFGAVESA LAQATKKLYQ GEVDIRVAID RDSGNYDTFR
RWLVVPDDAG LQNPDAEEML MDAQDRVPGI SEGEYIEEEI ESVPIGRIGA MAAKQVILQK
IRDAEREMLL NEFLSRGDRI FTGTVKRMDK GDIIVEAGRV EGRLRRNEMI PKENLRNGDR
VRAMIMEVDA TLRGAPIILS RSAPEFMVEL FRNEVPEIEQ GLLEIKSCAR DSGSRAKIAV
LSHDKRVDPI GTCVGVRGTR VNAVTNELAG ERVDIVLWSE DPAQFVIGAL APANVSSIVV
DEEKHAMDVV VDEENLAIAI GRGGQNVRLA SELTGWKINI MDAAESAQKQ ADESAVARQL
FMEKLDVDEE IANILIEEGF ETLEEVAYVP LQEMLEIEAF DEETVNELRT RAKDALLTQE
IAHEENVGKV SQDLLTLEGM TPEIVDKLAE ADVHTRDDLA DLAIDELTEL TGQTEEEAKA
LIMKAREHWF TEGQE
|
|---|
| |