Gene Daci_2929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2929 
Symbol 
ID5748511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp3216654 
End bp3218219 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content69% 
IMG OID641298030 
ProductABC transporter related 
Protein accessionYP_001563952 
Protein GI160898370 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.180289 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAT CCCCTGTGCA CGGGCCGGAC CGCGGCCCAC CCGCGCCTGC CGCACCGCGC 
GCGCAACACG CGCCCCATGC CTGCAGCGAC CTGCTGGAGG TGCGTGGGGT GGGCAAGTCG
TTTCCGGGCG TCGTGGCGCT GGCCGATGTG CAGCTGCGCC TGCGCAGCGG CAGCGTGCAT
GCGCTGATGG GCGAGAACGG TGCCGGCAAA TCCACCCTGA TGAAGATCAT TGCCGGCGTG
CATGCGCCCG ACACCGGCGA GATCCGCCTC AGGGGCCGGC CCGTCACGCT GCGCAGCCCG
CTGGATGCGC TCAGGCAAGG CATTGCCATG ATCCACCAGG AACTGAACCT CATGCCCACC
ATGACGGTGG CCGAGAACAT CTGGATAGGC CGCGAGCCCG TCAACCGCTT GGGCCTGGTC
GACCACCGCC AGCTGCGCCA GCGCACCCAG GCCCTGTTCG AGCGGCTGGC CATCGACATG
GACCCCGACT CCGAGGTGCG CACGCTGAGC GTGGCCAGCC GCCAGATGGT GGAGATCGCC
AAGGCCGTGT CCTTCGACTT CGAGGTGCTG ATCATGGACG AGCCCACCTC CGCGCTCACC
GACCGGGAGG TGGAGCACCT GTTTCGCATC ATCGGCCACC TGCGCGGCCA GGGCAAAGGC
ATCGTCTACA TCACGCACAA GATGAACGAG CTGTTCGAGA TCGCCGACGA GTTCTCGGTG
TTCCGCGACG GCAGGTACAT AGGCACGCAT GCATCGGCCG ATGTCACGCG CGACGACATC
ATCCGCATGA TGGTCGGGCG CGAGATCACC CGGATGTTCC CCAAGCAGGA CGTGGCCCTG
GGCGATGTGG TGCTCTCGGT GGACGGGCTG GGCGTCGAGG GCGTGTTCCA TGGCCTGCGC
TTCGAGCTGC GCGCCGGGGA GATCCTGGGC GTGGCCGGCC TGGTGGGCTC CGGGCGCTCC
AATCTTGCCG AGGCGCTGTT CGGCGTCGTG CCCGCCACCT GCGGCGAGAT CCGCATCGGC
GGCGAGCCGG TGCGCATCAC CTCGCCTGCC CAGGCCATGC GGCTGGGCAT GGCCTTTCTC
ACCGAGGACC GCAAGGACAC GGGCTGCTTC ATGGGCCTGG ACCTGCTGGC CAACATGGAG
GTGGCGCTGC TGCACGAGCG CCATGTGCGC TGGGGTCTGG TCGCGCATGC CGCCGTGGCA
CGCGAATGCG AGGACATGGC CCGCACGCTG CAGGTCCGGT CCCCCGGGCT GCACGAGGAC
ATCCGCAACC TGTCGGGCGG CAACCAGCAA AAGGTGCTGA TCGGCCGCTG GCTGCTGACG
CGCCCGCGCA TCCTCATCCT GGACGAGCCG ACGCGCGGCA TCGACGTGGG CGCCAAGGCC
GAGATCCATC GCCTCGTGGG CGCGCTCGCG GCCCAGGGAA CTGCCGTGCT GATGGTCTCC
TCGGAAATGC CCGAGGTGCT GGGCATGAGC GACCGCATCC TGGTCATGCA TGAGGGGCGC
ATGACCGGCA TCGTCGAGCG CAGGGACGCC GACCAGGTGC GGATCATGGA ACTGGCCTCC
CGCTGA
 
Protein sequence
MSASPVHGPD RGPPAPAAPR AQHAPHACSD LLEVRGVGKS FPGVVALADV QLRLRSGSVH 
ALMGENGAGK STLMKIIAGV HAPDTGEIRL RGRPVTLRSP LDALRQGIAM IHQELNLMPT
MTVAENIWIG REPVNRLGLV DHRQLRQRTQ ALFERLAIDM DPDSEVRTLS VASRQMVEIA
KAVSFDFEVL IMDEPTSALT DREVEHLFRI IGHLRGQGKG IVYITHKMNE LFEIADEFSV
FRDGRYIGTH ASADVTRDDI IRMMVGREIT RMFPKQDVAL GDVVLSVDGL GVEGVFHGLR
FELRAGEILG VAGLVGSGRS NLAEALFGVV PATCGEIRIG GEPVRITSPA QAMRLGMAFL
TEDRKDTGCF MGLDLLANME VALLHERHVR WGLVAHAAVA RECEDMARTL QVRSPGLHED
IRNLSGGNQQ KVLIGRWLLT RPRILILDEP TRGIDVGAKA EIHRLVGALA AQGTAVLMVS
SEMPEVLGMS DRILVMHEGR MTGIVERRDA DQVRIMELAS R