| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2848 |
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| Symbol | |
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| ID | 5748424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 3120976 |
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| End bp | 3124470 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641297943 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001563871 |
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| Protein GI | 160898289 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.420758 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.818462 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTGC CCAAGCTCAC TCCCGGAAAA CGCTTCACCC TGCCCCGCCC CGTGGGCAGC
GCCGATGCCC TGCTGCTGGC CCGCCTGGGC GAGCGCGAGA AGGCTGCAGG CAGGGTGACG
GCCATCGTCA CGGCCGACGC CTCGGATGCC CAGCGGCTGA TCGACGAGAT GGCCTTCTTC
GCCCCGGGCC TGCGCTGCGC GCTGTTCCCC GACTGGGAGA CCCTGCCCTA CGACAGCTTC
TCTCCCCACC AGGACCTGAT CAGCGAGCGC CTGGCCACGC TGTGGCGCAT CAACCAGCGC
GACAAGGAGC ATGGCGCCGA CGTGGTGCTG GTGCCCGCCA CCACGGCGCT GTACCGGCTG
GCGCCGCCCT CCTTCCTGGC CGGCTACACC TTCGAGTTCA AGAGCGGCCA GAAGCTGGAC
GAAGCCAAAC TCAAGGCCCA GCTGACGCTG GCCGGCTACC AGCATGTCTC CCAGGTGGTC
AGCCACGGCG AGTACGCGGT GCGCGGCGGC CTGATCGACC TGTTCCCGAT GGGCTCGCTG
CAGCCCTACC GCGTGGATCT GTTCGACGAC GAGATCGACT CCATCCGCAC CTTCGACCCC
GACACCCAGC GCAGCCTCTA CCCCGTGCCC GAGGTGCGCC TGCTGCCCGG CCGCGAGTTC
CCCATGGACG AGGACGCGCG CGCCAAGTTC CGCCACCGCT GGCGCGAGCT GCTGGAGGGC
GATCCCACGC GCAGCCGCAT CTACAAGGAC ATGGGCCAAG GCATTGCCAC GGCCGGCATC
GAGTACTACC TGCCGCTGTT CTTCGACGAA ACGGCCACCG TGTTCGACTA CCTGGGCGCC
GATGCCACCG TGGTGATGCA TGGCGACCTG GAGCCGGCCT TCCAGCGCTT TTGGCAGGAC
ACCAAGGAGC GCTTCCGCCT GGTGCAGGGC GACCCCGAGC GCCCGGCCCT GGCGCCCGAG
GTGCTGTTCC TGTCCGCCGA TCAGTTCTAC ACGCGCGCCA AGGAGCACGC CCAGCTCGCG
CTGCGCCCAG GCACCGAGGA CGTGGCAGAC AGCGCCATCT TCCAGAAGCT GGAGGACCTG
TCCGTGGTGC GCGGCGCGGA AGACCCGCTG GCGCGCCTGC AAAGGCACAT TGCCACCAGC
GCCCACCGCA TCCTGCTGCT GGCCGAGTCC GATGGCCGGC GCGAAAGCCT GCTGGACTTC
TTCCGCGCCT CGGGCGTGAA CCCGCCAGTC TTCGACTCGC TGGCCGAGTT CCAGGGCGAT
GCGGGCGAGA AGGTGGGCAT TGCCACGGCC GGCCTGATGA ACGGCTTCGC CTGGGTGGAG
GAAGGCCTGG ACTTCGTCAC CGAGACGGAG CTGTTCGCCA CCAGCCCCAC GGGCCGCAGG
CGCCGCCGCC AGGAGCAGGT CAGCGATGTG GAGGCGCTGA TCAAGGACCT GTCCGAACTC
AAGGTGGGCG ACCCCGTGGT GCATTCGGAC CACGGCATCG GCCGCTACCA GGGCCTGGTC
AACATGGACA TGGGCCAGAA GAACCCTGAC GGCACGCCGG CCGTGCAGGA GTTCCTGCAC
CTGGAGTACG CGGGCAACGC CGTGCTCTAC GTGCCCGTCA GCCAGTTGCA GCTGATCAGC
CGCTACACGG GCGTCTCGCC CGAGGACGCT CCGCTGCACA AGCTCGGCGG CACGCAGTGG
GAAAAAGCCA AGCGCAAGGC GGCCGAGCAG GTGCGCGACT CGGCAGCCGA GCTGCTGAAC
ATCTATGCGC GCCGCGCCGC ACGCCAGGGC CATGCCTTCC GCTACTCGCC CCAGGACTAC
GAGCAGTTCG CCAACGACTT CGGCTTCGAG GAAACGGCGG ACCAGCGCGC TGCCATCCAC
GCCGTGATCC AGGACATGAT CAGCCCCCAG CCCATGGACC GCCTGGTCTG CGGCGACGTG
GGCTTCGGCA AGACCGAGGT GGCGCTGCGC GCGGCCTTCG TGGCCATCAC GGGCGGCAAG
CAGGTAGCCT TTCTCGCGCC CACCACGCTG CTGGCCGAGC AGCATTACCA GACCCTGGTG
GACCGCTTCT CCAAGTGGCC GATCAAGGTG GCCGAAGTCT CGCGCTTTCG CTCGGGCAAG
GAGATCACGG CGGCCGTCAA GGGCATTGCC GACGGCTCGG TGGACATCGT CGTGGGCACG
CACAAGCTGC TGTCGGAGTC CACGCAGTTC AAGAACCTGG GCCTGCTGAT CATCGACGAG
GAGCACCGCT TCGGCGTGCG CCACAAGGAA GCCATGAAGG CCATGCGCGC CGAGGTGGAC
GTGCTCACGC TGACGGCCAC GCCCATCCCG CGCACCATGG GCATGGCGCT GGAAGGCCTG
CGCGACCTGT CCGTCATCGC CACCGCGCCC CAGCGGCGCC TGGCCATCAA GACCTTTGTG
CGCAACGAGG GCACGGGCGT GATCCGCGAG GCCGTGCTGC GCGAGCTCAA GCGCGGCGGC
CAGTGCTACT TCCTGCACAA CGAGGTCGAG ACCATCGAGA ACCGCAAGCA AAAGCTCGAG
GAAATCCTGC CCGAGGCACG CATTGCCGTG GCCCACGGCC AGATGCCCGA GCGCGAGCTC
GAACGCGTGA TGCGCGACTT CGTGGCCCAG CGCTACAACA TATTGCTGTG CTCGACCATC
ATCGAGACCG GCATCGACGT GCCCAGCTCC AACACCATCC TCATCAGCCG CGCCGACAAG
TTCGGCCTGG CCCAGCTGCA CCAGCTGCGC GGCCGCGTGG GCCGCAGCCA CCACCAGGCC
TATGCCTACC TGATGGTGCC CGACCTGGAC AGCCTGACCA AGCAGGCCCA GCAGCGGCTG
GAGGCCATCC AGCAGATGGA GGAACTGGGT TCGGGCTTCT ACCTGGCCAT GCACGACCTG
GAGATCCGCG GCGCCGGCGA GGTGCTGGGC GAGAACCAGA GCGGCAACAT GATGGAGGTG
GGCTTCCAGC TCTACAACGA GATGCTGTCG GAGGCCGTGC GCAGCCTCAA GGCCGGCAAG
GAGCCCGACC TGCTCAGCCC GCTGTCGGCC TCCACCGACA TCAACCTGCA CGCGCCGGCC
CTGCTGCCCA ACGACTACTG CGGCGACGTG CACCTGCGCC TGTCCTTCTA CAAGAAACTG
GCCACGGCCC GCACCAGCGA CCAGATCGAC ACCCTGCTCG AAGAAATCGT GGACCGCTTC
GGCAAGCTGC CGCCCCAGGC GCAGACGCTG ATCGACGTGC ACCGCCTGCG CGTGCTGTCC
CAGCCCTACG GCGTGGTCAA GGTGGATGCA GCGCCCGGCG TCATCAACAT CACCTTCAAG
CCCCAGCCGC CCGTGGACCC GATGGCCATC ATCCACCTCA TCCAGAAGAA CAAGCACATC
AAGCTGGCCG GCAACGAGAA GCTGCGCATC GAGCGTGCCC TGGACAACCC CAAGGACCGC
GCCCAGATGG TGCGCGACGT GCTGCGCAGC CTGGGCCAGC CGCTGGTGGA GGCGAAGGCA
GCCCAGCCCG CATAG
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| Protein sequence | MELPKLTPGK RFTLPRPVGS ADALLLARLG EREKAAGRVT AIVTADASDA QRLIDEMAFF
APGLRCALFP DWETLPYDSF SPHQDLISER LATLWRINQR DKEHGADVVL VPATTALYRL
APPSFLAGYT FEFKSGQKLD EAKLKAQLTL AGYQHVSQVV SHGEYAVRGG LIDLFPMGSL
QPYRVDLFDD EIDSIRTFDP DTQRSLYPVP EVRLLPGREF PMDEDARAKF RHRWRELLEG
DPTRSRIYKD MGQGIATAGI EYYLPLFFDE TATVFDYLGA DATVVMHGDL EPAFQRFWQD
TKERFRLVQG DPERPALAPE VLFLSADQFY TRAKEHAQLA LRPGTEDVAD SAIFQKLEDL
SVVRGAEDPL ARLQRHIATS AHRILLLAES DGRRESLLDF FRASGVNPPV FDSLAEFQGD
AGEKVGIATA GLMNGFAWVE EGLDFVTETE LFATSPTGRR RRRQEQVSDV EALIKDLSEL
KVGDPVVHSD HGIGRYQGLV NMDMGQKNPD GTPAVQEFLH LEYAGNAVLY VPVSQLQLIS
RYTGVSPEDA PLHKLGGTQW EKAKRKAAEQ VRDSAAELLN IYARRAARQG HAFRYSPQDY
EQFANDFGFE ETADQRAAIH AVIQDMISPQ PMDRLVCGDV GFGKTEVALR AAFVAITGGK
QVAFLAPTTL LAEQHYQTLV DRFSKWPIKV AEVSRFRSGK EITAAVKGIA DGSVDIVVGT
HKLLSESTQF KNLGLLIIDE EHRFGVRHKE AMKAMRAEVD VLTLTATPIP RTMGMALEGL
RDLSVIATAP QRRLAIKTFV RNEGTGVIRE AVLRELKRGG QCYFLHNEVE TIENRKQKLE
EILPEARIAV AHGQMPEREL ERVMRDFVAQ RYNILLCSTI IETGIDVPSS NTILISRADK
FGLAQLHQLR GRVGRSHHQA YAYLMVPDLD SLTKQAQQRL EAIQQMEELG SGFYLAMHDL
EIRGAGEVLG ENQSGNMMEV GFQLYNEMLS EAVRSLKAGK EPDLLSPLSA STDINLHAPA
LLPNDYCGDV HLRLSFYKKL ATARTSDQID TLLEEIVDRF GKLPPQAQTL IDVHRLRVLS
QPYGVVKVDA APGVINITFK PQPPVDPMAI IHLIQKNKHI KLAGNEKLRI ERALDNPKDR
AQMVRDVLRS LGQPLVEAKA AQPA
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