Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2690 |
Symbol | |
ID | 5748266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 2959059 |
End bp | 2960327 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641297785 |
Product | conjugation TrbI family protein |
Protein accession | YP_001563713 |
Protein GI | 160898131 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00708765 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAGG ACGATTCCCC TGATCTTGCG GCGCAGGCGG GCAAGGTCGC GCCCGAGGCG GTGGCGCTGC GCGCCCAGCC GCGCCCGGTC ACGCGCCTGA ACCGGCGCAC GCTGGCCATC CTCGTCGGCG TCCTGTCGGT CGCCGTGCTC GGGGCCACGA TCTGGTCATT GCAGCCGCAC CGGCGCGGCA CGGGCGAGCA GACCGAGCTT TACAACGTCG ATCGCGTCTC GAAGTCCGAG GGGCTGGATG GTCTGCCGGC CGACTACTCG AAGCTGCCGC CGAAGGTGCC CGAGCTGGGG CCGCCGCTGC CGGGTGATCT CGGCCCAGCC ATCGTGAAGT CGCAGCAGCC GGTGACGCCG GCCTACGCAC AGCCGGGACA TGATCCGGCG GATGCATGGC GCAAGGAGGC CGATGCGGCG GCGAACTCGT CGGTGTTTTT CCGCTCGGGC AACCAAGGCA AGGCCACCGC GCCGGTCACG GCGCAAGCCG CTGCGGCTGC GCCCGGCAGC GCCTTGGCGG GCTTCGACCC GCTGGCCGCT GGCCCGGCCT CGACGGCGGC CCAGCCATCC GACCCGACAG CCGTGCAGAA CCGGCAAGAC CAGAAAGAGG CTTTCCTGAA AGGCGGTTCT ACGGAAACCC GCAATTCCGG CAATCTCCAG ATGCCGGCCT CGCCGTATCA GGTCATGGCG GGAACGGTGA TCGCGGGCGC GCTGGTGACG GGCATCAAGT CCGATCTGCC GGGCGACGTG ATAGCCACGG TGACGGAGCC GGTCTATGAC ACGGCCACTG GCAAGTTCCT GCTGATCCCA CAGGGATCGC GCATCCTGGG CAAGTACAAC AGCCAGGTGA GCTACGGGCA GAGCCGCGTA CAGGTGGTGT GGAACCGCGT CATCCTGCCG GACACGTCCT CGCTGAAGCT AGACAACCTG GCGGGCACTG ACCCTGCCGG CTATTCCGGC CTGGAGGATG GCGTCGATTG GCATTGGGAT CGCGTCTTCG CGGGTGCGGC GCTGACGACC CTGCTGGGCG TGGGTGCCGA GTTGGCCGCA CCGGAAAACC GGCAGGATGG CAACCGCATC GTGATCGCTG GGCGCGATAG CGCGCAGGAC AGCATCAACC AGGTCGGCCA AGAGATGACC CGGCGCAACA TGAACATCCA GCCGACGCTG ACCGAGCGGC CGGGCCTGCC GGTGCGGATC ATCGTCAACC GCGATTTTGT GCTGCGGCCG TACCAGCCTA TGTTCTTCAA CCGTGGAATT GCGAAATGA
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Protein sequence | MSQDDSPDLA AQAGKVAPEA VALRAQPRPV TRLNRRTLAI LVGVLSVAVL GATIWSLQPH RRGTGEQTEL YNVDRVSKSE GLDGLPADYS KLPPKVPELG PPLPGDLGPA IVKSQQPVTP AYAQPGHDPA DAWRKEADAA ANSSVFFRSG NQGKATAPVT AQAAAAAPGS ALAGFDPLAA GPASTAAQPS DPTAVQNRQD QKEAFLKGGS TETRNSGNLQ MPASPYQVMA GTVIAGALVT GIKSDLPGDV IATVTEPVYD TATGKFLLIP QGSRILGKYN SQVSYGQSRV QVVWNRVILP DTSSLKLDNL AGTDPAGYSG LEDGVDWHWD RVFAGAALTT LLGVGAELAA PENRQDGNRI VIAGRDSAQD SINQVGQEMT RRNMNIQPTL TERPGLPVRI IVNRDFVLRP YQPMFFNRGI AK
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