Gene Daci_2568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2568 
Symbol 
ID5748137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2841528 
End bp2841926 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content63% 
IMG OID641297656 
Productcarboxymuconolactone decarboxylase 
Protein accessionYP_001563591 
Protein GI160898009 
COG category[S] Function unknown 
COG ID[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID[TIGR02425] 4-carboxymuconolactone decarboxylase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.136392 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGAG CCTATGCACC CAAGAACCCC GCCCTCTTCG ACCAGGGCCT GTCCACCCGC 
CGCGAGGTGC TGGGCGCCGA GTATGTCGAT GCGTCCATCC AGAACGCCAC GGACTTCAAC
ATCGACATGC AGGAGCTGGT CACCCAGTAC TGCTGGGGCG ATGTCTGGAA CCGCCCGGGC
CTGGACCGCA GGACGCGCTC CTTCCTGAAC CTGGCCATGA TCACGGCGCT CAACCGCCCG
CATGAACTCA AGCTGCATGT GCGCGGCGCC ATCAACAACG GCCTGACCAA GGAAGAGGTC
AAGGAGGTCT TCCTGCAGAC CGCCATCTAC TGCGGCGTGC CGGCCGCCAT CGACTCCTTC
CGCGTGGCTT CGGAAGTCTT CAAAGAGATG GACATCTGA
 
Protein sequence
MTRAYAPKNP ALFDQGLSTR REVLGAEYVD ASIQNATDFN IDMQELVTQY CWGDVWNRPG 
LDRRTRSFLN LAMITALNRP HELKLHVRGA INNGLTKEEV KEVFLQTAIY CGVPAAIDSF
RVASEVFKEM DI