Gene Daci_2544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2544 
Symbol 
ID5748113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2817150 
End bp2818253 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content68% 
IMG OID641297632 
Productporin 
Protein accessionYP_001563567 
Protein GI160897985 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.644529 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCTGC CCAGCCCTAT CACCCTCGCC ACACCCATGA ACACCAAAAC CCTGGTGCTG 
ATCACCCTCG CTGCCGCACC GCTGTCGGCC CTTGCGCAAT CCAGCATCAC GCTCTACGGC
ATTGCCGATA CCGGCGTGCG CTACACCAGC GGCCTCACCG CCGCCAACGC GGCCAGCAAC
ACCTCGGGCG CCGCGCTGTC CAGCGGCGTC AACACCACCA GCCGCTTCGG GTTTCGCGGC
CGCGAAGACC TGGGCGGCGG CATGTACGCC CTGTTCAACC TGGAAACCGG CCTGAACCTG
GACACCGGCA CCACCGCCAA CTCCAGCAAA TTCTTCGACC GCGCGGCCAT CGTGGGCCTG
GGCGGCAACT GGGGCCAGGT CACGGCCGGC CGCCAGACCA ACCTGCTGGC AGATGCCATC
AGCCCTGTGG ACCCCGTGGG AATGCGCTTC GCCGCCTTCA ACCCCAACAT CGCCACCGCC
GCGCTCAGCA GCCACGGCCT GGGCGTGGAA TACGGCAGCG CGGGCGCCAC CACGGGCTCC
TACCGGCTGG ACAACTCGGT CAAGTACACC GGCCGCCTCG GCGGCCTCAC CGCCCGCGCC
ATGTACAGCT TTGGCGAGAC GGCGCAAGGC GGCTCCGCCC GCTCATCGGC CGGCGCGGGC
CTGGCCTATG GCACGAAGAC ATGGACCGTC TCCGGCGCCT ACCAGCGCTT CAAGACCGCA
GACCAATGGG AACTGAAAGC CGCTACCCTG GGCGCCAGCT ACAAATGGGA CAACCTGCGC
CTTGCGCTGA ACACCGCGCG CAGCGACGGC CAGACCAACG CCACCACCGC CCGCACCGTG
CAGCGCGTGC ACTCGCTGGG CGCCACCTGG TCCGCCCGCA GCACGCTGGA CCTGACCGCC
GCCCTGTACC GCGTGGAACG CGAACGCAGC GGCCGCGCCG CAGACGGCTA CACCCGCGCC
CTGCTGTTTG CGGAATACAA GCTGTCACGC CGCAGCAAGC TGTATGCGGA GTTGGACCGC
ACGCATTGGA GTGGAGGGTT TCAGGGCGGG CAGAACAAGG ATGTGGCTAC GGGGGTGACT
GCGGGGTTGA TGCATAGTTT CTGA
 
Protein sequence
MPLPSPITLA TPMNTKTLVL ITLAAAPLSA LAQSSITLYG IADTGVRYTS GLTAANAASN 
TSGAALSSGV NTTSRFGFRG REDLGGGMYA LFNLETGLNL DTGTTANSSK FFDRAAIVGL
GGNWGQVTAG RQTNLLADAI SPVDPVGMRF AAFNPNIATA ALSSHGLGVE YGSAGATTGS
YRLDNSVKYT GRLGGLTARA MYSFGETAQG GSARSSAGAG LAYGTKTWTV SGAYQRFKTA
DQWELKAATL GASYKWDNLR LALNTARSDG QTNATTARTV QRVHSLGATW SARSTLDLTA
ALYRVERERS GRAADGYTRA LLFAEYKLSR RSKLYAELDR THWSGGFQGG QNKDVATGVT
AGLMHSF