| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2498 |
|---|
| Symbol | |
|---|
| ID | 5748061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Delftia acidovorans SPH-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010002 |
|---|
| Strand | + |
|---|
| Start bp | 2758450 |
|---|
| End bp | 2761158 |
|---|
| Gene Length | 2709 bp |
|---|
| Protein Length | 902 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641297580 |
|---|
| Product | 2-oxoacid dehydrogenase subunit E1 |
|---|
| Protein accession | YP_001563521 |
|---|
| Protein GI | 160897939 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type
[TIGR03186] alpha-ketoglutarate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.710638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.585556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGCT GGAATATGGC GTTTTCCTTA TCCATGAACG GCTGCTCATG CCGGCCTGCC
AGTCCTAAAG TGGCGGACAT GAACGCACCC ACGCCACTGG CCGCGCTGGC CGATATCGAT
ACCGATCCCC AGGAAACCGC CGAATGGCGC GAGGCCTTTC TGGCCCTGGT CGCCACAGAA
GGTCCGCAGC GAGCGCGCTT CGTGCTGGCA GAGCTGGCGC GCATGGCGCG CGAGCAGCGC
CTGGGCTGGC AGCCCGACCT GAACACGCCC TATGTGAACA GCGTGGCGGC GCAGCAGCAG
CCGGTGTTTC CGGGCGACCT GGCCATCGAG GAGCGGCTGG CGTCCATCAT GCGCTGGAAC
GCGCTGGCCA TGGTGGTGCG CGCCAACCAG GCCTATGGCG AGCTGGGCGG CCATATTGCC
AGCTATGCCA GCGCGGCCGA CCTGTTCGAG ACCGGGTTCA ATCATTTCTT CCATGCCCGG
GAGGGACTTG AGCCGGGCCA GCACCGGGGC GACCTGGTGT TCTTCCAGCC GCACAGCGCG
CCCGGCGTGT ATGCGCGGGC CTTCCTGGAA GGGCGGCTGA CCGAGCAGGA CCTGCAGCAC
TACCGCCAGG AGATCAGCGC GCCGGCTGCA GGCGCGCAAG GCCTGTCCAG CTATCCCCAT
CCCTGGCTGA TGCCCGATTT CTGGCAGTTC CCCACGGGCT CCATGGGCAT TGGCCCCATC
AGCAGCATCT ACCACGCGCG CTTCATGCGC TATCTCACGC ACCGCCGCCT GCTGGACTGC
CAGGAACGCA AGGTCTGGGG CGTGTTCGGC GACGGCGAGA TGGACGAACC CGAAAGCATG
AGCGCTCTCA CGCTGGCCGC GCGCGAGGGG CTGGACAACC TGGTCTGGGT GGTCAACTGC
AATCTGCAGC GGCTGGACGG CCCGGTGCGC GGCAACGGCC GCATCGTCGA TGAGCTGGAG
CGGCTGTTTG CCGGCGCGGG CTGGAACGTG GTCAAGCTGC TGTGGGGCAG CGACTGGGAC
GGGTTGTTTG CGCGCGACCT CACCGGCACC CTGGCACGCA CGCTGGGCGG CACGGTGGAC
GGGCAGATGC AGACCTTCGC CGCCAATGAC GGACGCTACA ACCGCGAGCA TTTCTTCGGA
CAGAACCCCG AGCTTGCCGC CCTGGCCCAG GGCCTGACGG ACGAGCAGAT CGACCGCTTG
AAGCGCGGCG GCCATGACCT GGTGAAGATC CATGCGGCCT ATGCAGCGGC TGCCGCCCAT
CGCGGCCAGC CCACGGTGAT CCTTGCCCAT ACCAAGAAGG GCTACGGCAT GGGCTCGGCC
GGGCAGGGCA AGATGACCAC GCACAGCCAG AAGAAGCTGG ACGAGTCCGA CCTGATCGAG
TTCCGCAACC GCTTCAACCT GCCGCTCAGT GACGAGCAGG CCAAGGGCCT GGCCTTCCAT
AAACCTGCCG ATGACAGCGC CGAGATGCAG TACCTGCGCG ATCGCCGCAC GGCCCTGGGC
GGCGCACTGC CGCGCCGTGA AACCGTGTGC GACCGCGTGC CCGTGCCCGC CCTTGAGCAG
TACGCGCAGT TCGCGCTGGC GCCTGCCGGC AAGGAGATGA GCACCACCAT GGCCTTTGTG
CGCATGCTGG GCGGCCTGCT CAAGGACGCG CAGCTGGGGC CGCGCATCGT GCCCATCGTG
GCGGACGAGG CGCGCACCTT CGGCATGGCC AACCTTTTCA AGCAGGTGGG CATCTACAGC
AGCCTGGGCC AGCGCTATGC GCCCGAAGAC ATCGGCTCGG TGCTGTCCTA CCGCGAGGCG
CTGGACGGCC AGATCCTGGA GGAGGGCATC AGCGAGGCCG GCGCCATCGC CAGCTGGACG
GCGGCAGCCA CCAGCTACAG CGTGCACGGC CTGGCCATGC TGCCGTTCTA CATCTACTAC
TCCATGTTCG GCTTCCAGCG CGTGGGCGAC GCCATCTGGG CGGCGGCCGA CCAGCGGGCG
CGCGGCTTTC TGCTGGGCGC CACCTCGGGC CGCACCACGC TGGGCGGAGA AGGCCTGCAG
CACCAGGACG GCTCCAGCCA TCTGGTGGCG GCCACCATTC CCAACTGCAA GGCCTGGGAC
CCCGCGCATG CGGGCGAGCT GGCCGTGATC CTGGACGCCG GCATGCGCGA GATGCTGGTG
GAGCAGCGCG ACGTTTTCTA CTACATCACC CTGATGAACG AGAACTACGC CCAGCCTGAC
CTGCCACAGG GCGCGGCCGA AGGCGTGCTG CGCGGCGGCT ATGTGTTCGG CCGCTTTGGC
GATGCGGGCC ATGCCACGCA GCATGTCACC TTGCTGGGAT CGGGCGCCAT CCTCACCGAA
GTGCTCAAGG CCGCCGAGCA ATTGGCCAGC GAGGGCATGG CGGCCACCGT GGTCAGCGTG
ACCAGCTGGA GCGAACTGGC GCGCGATGGC GTGGCCTGCG AGCAGCGCAT GCTGGCAGGT
GAGGCACCTG GCCAGCCCTG GATCGCCCAA CTGCTGGACG GCACGCAGGG CCCGGTGATT
GCTGCCACCG ACTATGTGCG CGCTGTGCCC GAGACCGTGC GCGCCTTCCT GCCCGCAGGC
AGGCGATTCC TCACCCTGGG CACGGACGGC TTTGGCCGAA GTGACACGCG TGCCGCTTTG
CGCGGCCACT TTGGCGTGGA CGCGCACAGC GTGGCGCAGG CGGCGCGCCG CTGCAGCCAG
GCGGCCTGA
|
|---|
| Protein sequence | MKCWNMAFSL SMNGCSCRPA SPKVADMNAP TPLAALADID TDPQETAEWR EAFLALVATE
GPQRARFVLA ELARMAREQR LGWQPDLNTP YVNSVAAQQQ PVFPGDLAIE ERLASIMRWN
ALAMVVRANQ AYGELGGHIA SYASAADLFE TGFNHFFHAR EGLEPGQHRG DLVFFQPHSA
PGVYARAFLE GRLTEQDLQH YRQEISAPAA GAQGLSSYPH PWLMPDFWQF PTGSMGIGPI
SSIYHARFMR YLTHRRLLDC QERKVWGVFG DGEMDEPESM SALTLAAREG LDNLVWVVNC
NLQRLDGPVR GNGRIVDELE RLFAGAGWNV VKLLWGSDWD GLFARDLTGT LARTLGGTVD
GQMQTFAAND GRYNREHFFG QNPELAALAQ GLTDEQIDRL KRGGHDLVKI HAAYAAAAAH
RGQPTVILAH TKKGYGMGSA GQGKMTTHSQ KKLDESDLIE FRNRFNLPLS DEQAKGLAFH
KPADDSAEMQ YLRDRRTALG GALPRRETVC DRVPVPALEQ YAQFALAPAG KEMSTTMAFV
RMLGGLLKDA QLGPRIVPIV ADEARTFGMA NLFKQVGIYS SLGQRYAPED IGSVLSYREA
LDGQILEEGI SEAGAIASWT AAATSYSVHG LAMLPFYIYY SMFGFQRVGD AIWAAADQRA
RGFLLGATSG RTTLGGEGLQ HQDGSSHLVA ATIPNCKAWD PAHAGELAVI LDAGMREMLV
EQRDVFYYIT LMNENYAQPD LPQGAAEGVL RGGYVFGRFG DAGHATQHVT LLGSGAILTE
VLKAAEQLAS EGMAATVVSV TSWSELARDG VACEQRMLAG EAPGQPWIAQ LLDGTQGPVI
AATDYVRAVP ETVRAFLPAG RRFLTLGTDG FGRSDTRAAL RGHFGVDAHS VAQAARRCSQ
AA
|
|---|
| |