| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2316 |
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| Symbol | |
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| ID | 5747879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2548672 |
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| End bp | 2550618 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641297398 |
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| Product | ABC transporter related |
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| Protein accession | YP_001563339 |
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| Protein GI | 160897757 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.999861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.49584 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAGC CATTGCTGCA GATGCGGGGA CTGCGCAGGG AGTTCCCCGC CGGTGACACC
ACGGTCGCCG TGCTCAAGGA CATCGACCTG ACCATCGAGG CCGGCGAGAT GGTGGCCATC
GTCGGCGCCT CGGGCTCGGG CAAGTCCACG CTGATGAACA TCCTCGGCTG CCTGGACCAT
CCGACCTCGG GCAGCTACCG CATCGCCGGC CGCGAGACCG GCGAGCTGGG CCCCGATGCG
CTGGCCGCGC TGCGGCGCGA GCATTTCGGC TTCATCTTCC AGCGCTACCA CCTGCTGGCC
GACCTCACGG CCCAGGGCAA TGTGGAGCTG CCATCGGTCT ACGCCGGCAC GGCGCCCACG
GACCGCCATG CGCGCTCGGC CGCCCTGCTC GAACGCCTGG GCCTGGCCGA CCGCATGCAG
CACCGGCCGG GCCAGCTGTC GGGCGGGCAG CAGCAGCGCG TGTCCATCGC CCGCGCGCTG
ATGAACGGCG GCGCCGTCAT CCTGGCCGAC GAGCCCACGG GCGCGCTGGA CAAGGCCAGC
GGCGAGCAGG TCATGCGCAT CCTGCAGGAG CTGCATGCCG ACGGCCACAC CATCATCCTG
GTCACGCACG ACATGGCCGT GGCGGCCCAC GCCTCGCGCG TGATCGAGAT CAGCGACGGC
GCCATCATCG CGGACCGGCG CAGCGCCCCG CATGAAAGCA AGCCCCCGCT GGAGGCGACA
GCCGCCCCGC GCGCCGCCTC CTGGCGCATG TTCGGCGACC GCTTCGGCGA AGCGCTGCGC
ATGGCGCTGC GGGCCATGAA CGCGCACCGC CTGCGCACCT TCCTGACCAT GCTGGGCATC
ATCATCGGCA TCTCTGCCGT GGTCTCGGTG GTGGCGCTGG GGCGCGGCGC GCAGCAGCAG
GTGATGAACC AGATCAGCGA GCTGGGCACG AACACGCTGG ACATCTTCCC GGGCAAGGAC
TTCGGCGACA CGCGCGCCGC CGCCATCGAG ACCCTGGTTG CCGCCGATGC CCAGGCCCTG
GCCGAGCAGC CCTACGTGGA CAGCGCCACG CCCAACGTAT CGGTCAGCGT CACGGCGCTG
TACCGCGAGA ACGCGGCCAT GGCCCAGGTG ACGGGCGTGG GCTTCGAGCA CTTCCGCGTG
AAGGGCCTGC GCCTGGCGTC TGGGCGGTTC TTCGACCAGC GCGACGTGGA CCTGCACGCC
CAGGTCGCGG TCATCGACCA GAAGGCCGCC ACCGCGCTCT TCCCCGGCAA CCCCAGCCCG
CTGGGCGAGG TGGTGATGCT GGGCGAGATG CCCGTGGAGA TCGTGGGCGT GCTGCGCCCC
GCGCAAAACA GCTTCGGTGG CTCCACGCCC ACCTTCTTCG TGCCCTACAC GGCAGCCGCC
ACGCGCCTGG TCGGCAAGTA CCACCTGGAC AGCATCACGC TGCGCATCAA GGACGAGGTG
CCGGCCGAGA TCGCGCTGAA GGCGGCCACC AGCCTGCTCA CGGAACGCCA CGGCACCAAG
GACTTCTTCG TCTGGAACTC CGACCAGATC CGCCAGGCCA TCACGCGCAC CAGCACCACG
CTGACGCTGC TGGTCTCGGC CATCGCCATG ATCGCGCTGC TGGTGGGCGG CATCGGCGTG
ATGAACATCA TGCTGGTGTC GGTGACCGAG CGCACGCGCG AGATCGGCGT GCGCATGGCC
ATCGGCGCGC GCCAGTCGGA CATCCTTCAG CAGTTCCTGA TCGAGGCCGT GCTGGTCTGC
ATCGTGGGCG GCATCCTGGG TGTCTCTCTG GCGCTGAGCC TGGGCCTGGC AGTGAGCCTG
TCGGGCTCCA GCTTCCAGCT GTCGTTCTCG GCCGCCTCCA TCGTGCTGGC CGTCGCCTGC
TCCTCGCTCA TAGGCATCAC CTTCGGCTTC CTGCCCGCGC GCAGCGCGGC GCGCCTGGAC
CCCGTCCAGG CCCTCTCCAG AGATTGA
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| Protein sequence | MDQPLLQMRG LRREFPAGDT TVAVLKDIDL TIEAGEMVAI VGASGSGKST LMNILGCLDH
PTSGSYRIAG RETGELGPDA LAALRREHFG FIFQRYHLLA DLTAQGNVEL PSVYAGTAPT
DRHARSAALL ERLGLADRMQ HRPGQLSGGQ QQRVSIARAL MNGGAVILAD EPTGALDKAS
GEQVMRILQE LHADGHTIIL VTHDMAVAAH ASRVIEISDG AIIADRRSAP HESKPPLEAT
AAPRAASWRM FGDRFGEALR MALRAMNAHR LRTFLTMLGI IIGISAVVSV VALGRGAQQQ
VMNQISELGT NTLDIFPGKD FGDTRAAAIE TLVAADAQAL AEQPYVDSAT PNVSVSVTAL
YRENAAMAQV TGVGFEHFRV KGLRLASGRF FDQRDVDLHA QVAVIDQKAA TALFPGNPSP
LGEVVMLGEM PVEIVGVLRP AQNSFGGSTP TFFVPYTAAA TRLVGKYHLD SITLRIKDEV
PAEIALKAAT SLLTERHGTK DFFVWNSDQI RQAITRTSTT LTLLVSAIAM IALLVGGIGV
MNIMLVSVTE RTREIGVRMA IGARQSDILQ QFLIEAVLVC IVGGILGVSL ALSLGLAVSL
SGSSFQLSFS AASIVLAVAC SSLIGITFGF LPARSAARLD PVQALSRD
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