Gene Daci_2197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_2197 
Symbol 
ID5747759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp2411012 
End bp2412142 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content64% 
IMG OID641297280 
Productextracellular ligand-binding receptor 
Protein accessionYP_001563222 
Protein GI160897640 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.974618 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGT CCCGGAAGTT GTGTATTGCG GCCGTCGTGG CCGGCATGGG TGGCGTGGCC 
ATGGCCCAGG AGCAGGTGAT CCGCATCGGC CACATCGGCC CGGTGTCCGG ACCCCAGGCC
AATTTCGGCA AGGACAACGA AAACGGCGTA CGCATGGCCA TCGACGAGCT CAATGCCAAG
GGCATGGAGA TCGCCGGCAA GAAGGTCAAG TTCCAGCTGG TGGCCGAAGA CGATGTGGCC
GATCCCAAGC AGGGCACGGC CGCCGCGCAG AAGCTGTGCG ACGACAAGGT CGCCGGCGCC
GTGGCCTTCC TCAACTCGGG CGTGGCCATT CCCTCGTCCA AGGTCTTCCA GGACTGCGGC
ATTCCCATGA TCACGGGCGC GGCCACCAAC CCCGACCTGA CCAAGCCCGG CTGGAACACC
ACCTACCGCG TGATCGCCAA CGACAACGCC CTGGGCGCGG CGCTGGCCAA GTACGCGGCC
GAAACGCTCA AGCTCAAGAC CGTGGCCATC ATCGATGACC GCACGGCCTA CGGCCAGGGC
CTGGCCAATG TGTTCAAGAA GGATGCGGAA AAGCTGGGCG TGAAGGTCGT GGCCTCGGAG
TTCACGAACG ACAAGGCCAC GGACTTCATG GCCATCCTGA CCTCCATCAA GGCCAAGAAG
CCCGAGGGCA TCTTCTACGG CGGCATGTAC GGCCAGGCCG GCCCCATGCT GCGCCAGATG
GCCCAGCTGG GCCTGAACGA TGCCAAGTAC TTCGGCGGCG ATGGCCTGTG CGTGCCCGAG
CTGGCCAAGG TGGCGGCCGG TGCCAAGCCG CTGGACAACG TGATCTGCGC CGATGGCGGC
GCCTCGCTGG CCAAGATGCC CGGCGGCACG GAATGGAAAA AGCGCTACGA CGCCAAGTAC
CCCGGCCAGT TCCAGGTCTA CAGCCCGTAC TTCTACGACG CCACCATGAT GCTGGCCGAC
GCCATGAAGC GCGCCAACTC CTGGGACCCC AAGGTCTACA TTCCCTTCCT GCAAAAGGCC
GACTACTCGG GCGTGACCTC GAAGATCGCC TTCGAGAAGA ACGGCGAGAT GAAGAACCCC
TCGTACACGC TGAGCGTGTT CAAGAACGGC CAGAAGACAG CCCTCGACTG A
 
Protein sequence
MKMSRKLCIA AVVAGMGGVA MAQEQVIRIG HIGPVSGPQA NFGKDNENGV RMAIDELNAK 
GMEIAGKKVK FQLVAEDDVA DPKQGTAAAQ KLCDDKVAGA VAFLNSGVAI PSSKVFQDCG
IPMITGAATN PDLTKPGWNT TYRVIANDNA LGAALAKYAA ETLKLKTVAI IDDRTAYGQG
LANVFKKDAE KLGVKVVASE FTNDKATDFM AILTSIKAKK PEGIFYGGMY GQAGPMLRQM
AQLGLNDAKY FGGDGLCVPE LAKVAAGAKP LDNVICADGG ASLAKMPGGT EWKKRYDAKY
PGQFQVYSPY FYDATMMLAD AMKRANSWDP KVYIPFLQKA DYSGVTSKIA FEKNGEMKNP
SYTLSVFKNG QKTALD