Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daci_2129 |
Symbol | |
ID | 5747691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Delftia acidovorans SPH-1 |
Kingdom | Bacteria |
Replicon accession | NC_010002 |
Strand | - |
Start bp | 2335218 |
End bp | 2337101 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641297212 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001563154 |
Protein GI | 160897572 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.590205 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGATC CCCAGATGCT CGCCAGCCTG CCCGCTGCCG CGGCCGTGCT ATCCGCCGCC GTGCGGTCAG GCGCAGGCCC CGTGGCGCAG CTCATGCGCG CGGGCGGCCT GTACTGCGTC TTCCAGCCGC TGGCCGACTT GCGCAGCGGC AGCATCTATG CGCATGAGGC GCTGATCCGC GGCCCCCGGG GCATGCCATT GCATACGCCC GATGCCCTGC TCAAGGGCGC TGCGGCCGAG GGCATTCTTC GGGAATTCGA GCTGCTGGCG GTCTGCGTGG CGCTGCAGGA CTGGGGCCGG CAGAGTGCGC CGGGCCGGCT GTTCATCAAC CTCAGCGCCC AGGCGCTGGT GCAGGCCGTG GGGGTCTGCG GCCCCGGCAT GGTCGGGGAC ACGGTGCGCA TCTTCGGCGT GCAGGCCCGC TCCCTGGTGG TGGAGATCAC CGAGCACGAC CATGTGACCG ACATGCCCGC CGTCTGCGCC GCCGTGAAGG CCGTGCATGC CACGGGCGCG CGCCTGGCGC TGGATGACTT TGGCGACGGC CGCTCCAGCC TGCGCCTGTG GTCCGAGGCC AAGCCCGACT TCGTCAAGAT CGACAAATAC TTCATCCACC AGATCGAGCA GCGCCCGGCC ACGCTGCAGC TGCTGCAGGC CATCAAGGGC ATTGCCGAGG TCTTCGGCAC CACGCTGATC GCCGAAGGCA TAGAGACCGA GGATGAGCTG CGCACCCTGC GCGACCTGGG CATTCCGTAT GGCCAGGGCT GGCTGCTGGG CCGCCCTGCC GAAACCGCCC AGCCCCAGAT CAGCACGCAG GCGCGCAGCG TGGCGCAGGA CCCGCGCGTG GCCGTGCTGC CCCACCAGGG ACACAGCGCG CGCCCGGGGG TGCTGCGCAA TCTGATGGTG ATGCAGGCGC CCTGCGTGGT GCCCGCAGCC AGCAACGACG AGGTGGCCGA GCTGTTCCAG GCCGGCCAGC AGTTGCATGC CATTGCCGTC GTGGAGGCCG GCCGGCCGCT GGCGCTCATC AACCGCCAGC AGTTCATGAA CCACTACGCC ACGCTGTACT TCCGCGAAGT GCACGGGCGC AAGCCCTGCC TGGCCTTTGC CAACGTGCAG CCGCGCATCG TGGAGCTCGA TTGCGATGTG GACCAGCTCG TGGGCATCCT GACCTCGCAG GACCAGCGCT ACCTGAGCGA CGGCTTCATC GTCACCGACA ACGGCCGCTA TGTGGGCCTG GGCACGGGCG AGCAGCTGGT GCGCCGCGTG ACCGAGGCCC GCATCGAGGC CGCGCGCCAC GCCAACCCGC TGACCTTCCT GCCCGGCAAC ATCCCCATCA GCCTGCACAT GCAGCGACTG CTGGACAGCG GCGCCGGCTT CGTGGCCTGC TACGCCGACC TCAACCACTT CAAGCCCTTC AACGACCACT ACGGCTACTG GCGCGGCGAC CAGATGATCC GCCTGGTGGC GCGGCTGGCC GTCGCGCACT GCGATGCGCG GCGCGACTTC GTGGGCCATG TGGGCGGGGA CGACTTCATG CTGCTGCTGC AAAGCGAGGA CTGGCAGCGG CGCTGCGAAG GCATTGTGGG CGCCTTCGCC AGCGAGGCGC GCCAGCTGTT CGACGACCAG GCGCGCGAGG CCGGAGGCAT CTGGGCCGAG GACCGCCACG GCATCCGGCG ATTCTTTGCC TGCACTACGC TGTCCATCGG CGTGGTGCGC GTCACGCCGG GCAGCATGCT GGCACCCGAG GACATCGCCA ACCTCGCGGC CCTGGCCAAG CAGCAGGCCA AGGCGCAAAG CCTGCCGGGG CGCGGCGCCA TCGCGCTGCA CACGCCGCAC GATGAAGCGC GGCGCCCGGC ACTGCATGGC ACCGCAGCGG CCTGGCCTGC CTGA
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Protein sequence | MIDPQMLASL PAAAAVLSAA VRSGAGPVAQ LMRAGGLYCV FQPLADLRSG SIYAHEALIR GPRGMPLHTP DALLKGAAAE GILREFELLA VCVALQDWGR QSAPGRLFIN LSAQALVQAV GVCGPGMVGD TVRIFGVQAR SLVVEITEHD HVTDMPAVCA AVKAVHATGA RLALDDFGDG RSSLRLWSEA KPDFVKIDKY FIHQIEQRPA TLQLLQAIKG IAEVFGTTLI AEGIETEDEL RTLRDLGIPY GQGWLLGRPA ETAQPQISTQ ARSVAQDPRV AVLPHQGHSA RPGVLRNLMV MQAPCVVPAA SNDEVAELFQ AGQQLHAIAV VEAGRPLALI NRQQFMNHYA TLYFREVHGR KPCLAFANVQ PRIVELDCDV DQLVGILTSQ DQRYLSDGFI VTDNGRYVGL GTGEQLVRRV TEARIEAARH ANPLTFLPGN IPISLHMQRL LDSGAGFVAC YADLNHFKPF NDHYGYWRGD QMIRLVARLA VAHCDARRDF VGHVGGDDFM LLLQSEDWQR RCEGIVGAFA SEARQLFDDQ AREAGGIWAE DRHGIRRFFA CTTLSIGVVR VTPGSMLAPE DIANLAALAK QQAKAQSLPG RGAIALHTPH DEARRPALHG TAAAWPA
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