| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daci_2078 |
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| Symbol | |
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| ID | 5747639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Delftia acidovorans SPH-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010002 |
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| Strand | - |
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| Start bp | 2272607 |
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| End bp | 2273983 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641297160 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001563103 |
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| Protein GI | 160897521 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.732091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGCCG GGCGCTACGA CGACCTCCCC CTGGTGCTGC GCCAGTCGAG CGAAGCGCAG
GCGGCCGTGC ACGGCCAGCC GCCTGCGGAC GCGTCCGGCG CAACGCCCCC CAGCCCTCGC
CGGACCGCCC TGGCGCGGGG CAAGTGGCTG CTCGTCATTC CCGTCGCCGC CCTGGTGGTC
ACCGGCCTGT TCTATCCGGT GGAGAACGTG GTGGTCGCCA GCGGCCAGGT CATCCCTTCC
GACCGCGTGC AGACCGTGCA GCATTTGGAA GGCGGCATCG TCACCGCCGT CCATGTGCGC
GAAGGCCAGG CCGTGACCCA GGGCCAGCCG CTGCTGGAAA TCGACCTGGG CAGCAACAGC
CTCAACCTCG AACAGCTCAC CGCCCGCATG GCCACGGCCC AGGCCGTCAA GGCGCGTCTG
GGCGCGGAAA GCCAGGGCCG GCCGCTGCAG CGCACGGCCT TCCCCGCCGA CCTGGACGCG
CAGGTGGTCC AGGCCGAACT GGGCGCCTTC TCGGCGCGCG CGCTGGAGCA CCAGGGCAGC
CTTGCCGCAG CCCAGGCCCA GCTGCAGCAG GCGCGCGGCG ACGTGGCCCA GGTGCAGGCG
CGCATCGAGG GGCTGGAGAC CAATCTGCGC CTGCACCAGC AGGAAGCCTC CATTGCCGGC
CAGCTTGCTT CCGAGCAGCT GATAGGCCAG CTGGAAGTGC TGGACAAGCA GCGGGCGCTG
GAGCAGGTCC GCGCCGAGCT GGCTGCCTCG CGCCAGACGC TTTTCAGCAA CCGCGCCAAG
ATCGAGCAGG CCCAGGCCAA GCTGCAGGAG ACCCAGGGCG CCTTCCGCCG CCGCGCCTCC
GACGAGCTGG CCCAGACCGA ACGCGAGCTG GCCAGCCTCA ACGAAGACCT GGTCCGCGCC
CGCACCCAGC GCACGCGCAC GGCCGTGCTG GCGCCCACCA GCGGCTTCGT CAAGGGCCTG
CGCAGTTCGG GCGCCGGTTG GGTGGTCAAG CCCGGCGAGC CCATCCTCGA AATCGTTCCG
GACAAGGATG AAGTCATCGT CGAGGCGCGC CTGAGTCCCG CCGACCGTGG CTATGTGCAC
CCCGGCCAGG CCACCCGGGT GAAGATCTCA GCCTACGACT TCCTGCGCTA TGGCTCGGTG
CCCGGCCAGG TCACCCTGGT GGCGGCCGAT GCCGACCGCG ATCCCAACCT GGCCGACTCG
CCCTCGTACT TCCGCATCCA GGCCAGCCTG GAGCAGCCCT GGGTGGGCCG CACCGACAAC
CGCATCACCA CCGGCATGCA GGCCGAACTC GACCTGCTGC TGGGCCACGA ACCCTTTATC
TGGTATTTGC TGCGGCCCGT GCTGCGCATC CAGAGCGAAG CCTTCCGGGA GCCCTGA
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| Protein sequence | MRAGRYDDLP LVLRQSSEAQ AAVHGQPPAD ASGATPPSPR RTALARGKWL LVIPVAALVV
TGLFYPVENV VVASGQVIPS DRVQTVQHLE GGIVTAVHVR EGQAVTQGQP LLEIDLGSNS
LNLEQLTARM ATAQAVKARL GAESQGRPLQ RTAFPADLDA QVVQAELGAF SARALEHQGS
LAAAQAQLQQ ARGDVAQVQA RIEGLETNLR LHQQEASIAG QLASEQLIGQ LEVLDKQRAL
EQVRAELAAS RQTLFSNRAK IEQAQAKLQE TQGAFRRRAS DELAQTEREL ASLNEDLVRA
RTQRTRTAVL APTSGFVKGL RSSGAGWVVK PGEPILEIVP DKDEVIVEAR LSPADRGYVH
PGQATRVKIS AYDFLRYGSV PGQVTLVAAD ADRDPNLADS PSYFRIQASL EQPWVGRTDN
RITTGMQAEL DLLLGHEPFI WYLLRPVLRI QSEAFREP
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